Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACLII2_RS08765 Genome accession   NZ_CP178213
Coordinates   1657349..1658419 (+) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652349..1663419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS08735 yqgY 1652543..1652788 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  ACLII2_RS08740 mgsR 1653020..1653400 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  ACLII2_RS08750 rsbRD 1653624..1654460 (+) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  ACLII2_RS08755 yqhB 1654513..1655841 (-) 1329 WP_009967730.1 hemolysin family protein -
  ACLII2_RS08760 corA 1655984..1656937 (+) 954 WP_004399136.1 magnesium transporter CorA -
  ACLII2_RS08765 comGA 1657349..1658419 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ACLII2_RS08770 comGB 1658406..1659443 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  ACLII2_RS08775 comGC 1659457..1659753 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ACLII2_RS08780 comGD 1659743..1660174 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ACLII2_RS08785 comGE 1660158..1660505 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ACLII2_RS08790 comGF 1660531..1660914 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  ACLII2_RS08795 comGG 1660915..1661289 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  ACLII2_RS08800 spoIITA 1661360..1661539 (+) 180 WP_003230176.1 YqzE family protein -
  ACLII2_RS08805 yqzG 1661581..1661907 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACLII2_RS08810 tapA 1662179..1662940 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=1088295 ACLII2_RS08765 WP_004399124.1 1657349..1658419(+) (comGA) [Bacillus subtilis subsp. subtilis strain BM107]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1088295 ACLII2_RS08765 WP_004399124.1 1657349..1658419(+) (comGA) [Bacillus subtilis subsp. subtilis strain BM107]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment