Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACLII2_RS04965 Genome accession   NZ_CP178213
Coordinates   963975..964619 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 958975..969619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS04935 - 959363..959731 (-) 369 WP_003243784.1 hypothetical protein -
  ACLII2_RS04940 - 959845..959970 (-) 126 WP_003228793.1 hypothetical protein -
  ACLII2_RS04945 degQ 960192..960332 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACLII2_RS04950 comQ 960517..961416 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  ACLII2_RS04955 comX 961404..961571 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  ACLII2_RS04960 comP 961586..963894 (+) 2309 Protein_985 two-component system sensor histidine kinase ComP -
  ACLII2_RS04965 comA 963975..964619 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACLII2_RS04970 yuxO 964638..965018 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  ACLII2_RS04975 mnhG 965057..965431 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ACLII2_RS04980 mrpF 965415..965699 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACLII2_RS04985 mrpE 965699..966175 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  ACLII2_RS04990 mrpD 966181..967662 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  ACLII2_RS04995 mrpC 967655..967996 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACLII2_RS05000 mrpB 967996..968427 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1088281 ACLII2_RS04965 WP_003220716.1 963975..964619(+) (comA) [Bacillus subtilis subsp. subtilis strain BM107]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1088281 ACLII2_RS04965 WP_003220716.1 963975..964619(+) (comA) [Bacillus subtilis subsp. subtilis strain BM107]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment