Detailed information NTG1088244

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI6PM_RS03265
• Genome accession: NZ_CP178211
• Coordinates: 704829..705695 (-)
• Length: 288 a.a.
• NCBI ID: WP_191471989.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain Pa_16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 699829..710695

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI6PM_RS03230 (ACI6PM_03230)	-	700174..701469 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
ACI6PM_RS03235 (ACI6PM_03235)	-	701554..701727 (-)	174	WP_013970765.1	DUF3094 family protein	-
ACI6PM_RS03240 (ACI6PM_03240)	-	701861..702490 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ACI6PM_RS03245 (ACI6PM_03245)	-	702546..702977 (-)	432	WP_015268860.1	hypothetical protein	-
ACI6PM_RS03250 (ACI6PM_03250)	-	703064..703771 (+)	708	WP_191471990.1	energy-coupling factor ABC transporter permease	-
ACI6PM_RS03255 (ACI6PM_03255)	yacG	704009..704209 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
ACI6PM_RS03260 (ACI6PM_03260)	coaE	704206..704829 (-)	624	WP_100413056.1	dephospho-CoA kinase	-
ACI6PM_RS03265 (ACI6PM_03265)	pilD	704829..705695 (-)	867	WP_191471989.1	prepilin peptidase	Machinery gene
ACI6PM_RS03270 (ACI6PM_03270)	-	705698..706906 (-)	1209	WP_015268864.1	type II secretion system F family protein	-
ACI6PM_RS03275 (ACI6PM_03275)	-	707122..707532 (+)	411	WP_412481576.1	pilin	-
ACI6PM_RS03285 (ACI6PM_03285)	-	708344..708637 (+)	294	WP_412481577.1	hypothetical protein	-
ACI6PM_RS03290 (ACI6PM_03290)	-	708920..709900 (+)	981	WP_412481824.1	integrase domain-containing protein	-
ACI6PM_RS03295 (ACI6PM_03295)	-	709897..710184 (+)	288	WP_412481578.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32059.27 Da
• Isoelectric Point: 7.9596

>NTDB_id=1088244 ACI6PM_RS03265 WP_191471989.1 704829..705695(-) (pilD) [Pseudomonas asiatica strain Pa_16]
MTLWTLLAEQPVYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=1088244 ACI6PM_RS03265 WP_191471989.1 704829..705695(-) (pilD) [Pseudomonas asiatica strain Pa_16]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGTGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGTACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Acinetobacter baumannii D1279779	53.585	92.014	0.493
pilD	Acinetobacter nosocomialis M2	52.83	92.014	0.486
pilD	Neisseria gonorrhoeae MS11	50.929	93.403	0.476