Detailed information NTG1088123

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACK2SD_RS04905
• Genome accession: NZ_CP178183
• Coordinates: 1069185..1070051 (-)
• Length: 288 a.a.
• NCBI ID: WP_412461504.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SC11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1064185..1075051

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2SD_RS04875 (ACK2SD_04875)	phnN	1064755..1065306 (+)	552	WP_295481051.1	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	-
ACK2SD_RS04880 (ACK2SD_04880)	-	1065352..1066647 (-)	1296	WP_039580135.1	NAD(P)/FAD-dependent oxidoreductase	-
ACK2SD_RS04885 (ACK2SD_04885)	-	1066925..1067554 (-)	630	WP_039580132.1	DUF1780 domain-containing protein	-
ACK2SD_RS04890 (ACK2SD_04890)	-	1067667..1068344 (+)	678	WP_412461503.1	energy-coupling factor ABC transporter permease	-
ACK2SD_RS04895 (ACK2SD_04895)	yacG	1068365..1068565 (-)	201	WP_029614418.1	DNA gyrase inhibitor YacG	-
ACK2SD_RS04900 (ACK2SD_04900)	coaE	1068562..1069185 (-)	624	WP_116889126.1	dephospho-CoA kinase	-
ACK2SD_RS04905 (ACK2SD_04905)	pilD	1069185..1070051 (-)	867	WP_412461504.1	prepilin peptidase	Machinery gene
ACK2SD_RS04910 (ACK2SD_04910)	-	1070053..1071258 (-)	1206	WP_412461505.1	type II secretion system F family protein	-
ACK2SD_RS04915 (ACK2SD_04915)	-	1071464..1071904 (+)	441	WP_116889120.1	pilin	-
ACK2SD_RS04925 (ACK2SD_04925)	-	1072203..1073063 (-)	861	WP_412461506.1	hypothetical protein	-
ACK2SD_RS04930 (ACK2SD_04930)	-	1073091..1073210 (-)	120	Protein_965	serine recombinase	-
ACK2SD_RS04935 (ACK2SD_04935)	-	1073268..1074464 (-)	1197	Protein_966	IS256 family transposase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31875.19 Da
• Isoelectric Point: 7.8510

>NTDB_id=1088123 ACK2SD_RS04905 WP_412461504.1 1069185..1070051(-) (pilD) [Pseudomonas sp. SC11]
MNLWILLVDQPGLFLAGAALLGLLVGSFLNVLVLRLPVMLERQWQKEAREVLGLGQVSYPRFDLCLPASHCPACQHRIRP
WENIPLLSYLLLRGRCSACRGRISLRYPLVELSCALLSWLVAWHFGVSEQALLGLLLTWCLLALSLIDADHQLLPDVLVL
PTLWLGLVINAFGVFVPLADALWGAVLGYLSLWSVYWVFRLITGKEGLGYGDFKLLALLGAWGGWQVLPLTLLLASLVGA
LVGVCLLKIKKASLQTTLPFGPYLAIAGWIAWLWGDEIHASYLQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1088123 ACK2SD_RS04905 WP_412461504.1 1069185..1070051(-) (pilD) [Pseudomonas sp. SC11]
ATGAACCTGTGGATATTGCTTGTCGACCAGCCGGGACTGTTCTTGGCCGGAGCGGCGCTGCTTGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGCTGCGGTTGCCAGTGATGCTGGAGCGCCAGTGGCAGAAGGAGGCGCGTGAGGTGCTGGGCC
TGGGCCAGGTGTCCTACCCGCGTTTCGACCTGTGCCTGCCTGCGTCGCACTGCCCGGCATGCCAGCATCGGATTCGGCCG
TGGGAAAACATTCCGCTGCTCAGTTACCTGTTGTTGCGCGGGCGCTGCTCGGCGTGCCGGGGGCGGATAAGCCTGCGCTA
TCCGTTGGTGGAACTGAGTTGCGCGCTGTTGTCGTGGCTGGTGGCGTGGCATTTCGGCGTGAGCGAGCAGGCGCTGCTGG
GCCTGCTGCTGACCTGGTGTCTGCTGGCCCTGAGCCTGATCGATGCGGACCATCAGTTGCTGCCAGACGTACTGGTGCTG
CCGACCCTGTGGCTGGGCCTGGTGATCAATGCCTTCGGGGTGTTCGTGCCGTTGGCCGATGCGCTGTGGGGGGCGGTGCT
CGGTTACCTGAGCCTGTGGTCGGTGTACTGGGTGTTCCGGCTGATCACCGGCAAGGAAGGCTTGGGCTACGGCGACTTCA
AACTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGGTGCTGCCGCTGACGTTGCTGCTGGCCTCGTTGGTGGGGGCG
CTGGTCGGGGTGTGTCTGCTGAAGATCAAAAAGGCCTCGTTGCAGACCACACTGCCTTTTGGACCTTATCTGGCCATTGC
GGGGTGGATCGCCTGGCTCTGGGGTGATGAAATACACGCTTCCTACCTGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.03	94.097	0.49
pilD	Acinetobacter baumannii D1279779	51.301	93.403	0.479
pilD	Acinetobacter nosocomialis M2	50.929	93.403	0.476
pilD	Neisseria gonorrhoeae MS11	49.81	91.319	0.455
pilD	Vibrio campbellii strain DS40M4	48.339	94.097	0.455