Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABXH20_RS09335 Genome accession   NZ_AP031328
Coordinates   1721041..1722045 (+) Length   334 a.a.
NCBI ID   WP_353300258.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1716041..1727045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH20_RS09305 (TthTF24_18370) - 1716193..1717413 (+) 1221 WP_353300255.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABXH20_RS09310 (TthTF24_18380) - 1717423..1717971 (+) 549 WP_353300256.1 Uma2 family endonuclease -
  ABXH20_RS09315 (TthTF24_18390) - 1717949..1718923 (-) 975 WP_353300257.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  ABXH20_RS09325 (TthTF24_18400) - 1719119..1720006 (-) 888 WP_143584533.1 acyltransferase -
  ABXH20_RS09330 (TthTF24_18410) era 1720051..1720956 (-) 906 WP_008630929.1 GTPase Era -
  ABXH20_RS09335 (TthTF24_18420) dprA 1721041..1722045 (+) 1005 WP_353300258.1 DNA-processing protein DprA Machinery gene
  ABXH20_RS09340 (TthTF24_18430) - 1722049..1722957 (-) 909 WP_353300259.1 manganese catalase family protein -
  ABXH20_RS09345 (TthTF24_18440) - 1723067..1724020 (+) 954 WP_353300260.1 LysR substrate-binding domain-containing protein -
  ABXH20_RS09350 (TthTF24_18450) - 1724007..1724963 (+) 957 WP_353300261.1 branched-chain amino acid transaminase -
  ABXH20_RS09355 (TthTF24_18460) - 1724953..1725141 (+) 189 WP_038034982.1 hypothetical protein -
  ABXH20_RS09360 (TthTF24_18470) - 1725143..1725382 (+) 240 WP_008630920.1 hypothetical protein -
  ABXH20_RS09365 (TthTF24_18480) trmH 1725372..1725956 (-) 585 WP_353300262.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ABXH20_RS09370 (TthTF24_18490) hisG 1725953..1726573 (-) 621 WP_353300263.1 ATP phosphoribosyltransferase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36024.86 Da        Isoelectric Point: 6.8886

>NTDB_id=108742 ABXH20_RS09335 WP_353300258.1 1721041..1722045(+) (dprA) [Thermus thermophilus strain TF24]
MDPLALALLPGIGPKRLLEALGSGDPLGFLRERFPEAWRHLGEAEARAERERRLAEAMGVRLLGLWEEGFPEGLKALPQP
PTHLYLKGELPPEREAVALVGTRRASPWALAFARRLARELAEAGLWVVSGLARGIDREAHLGALEAGGRTLGVLGSALDR
VYPPENRPLAQRMDLLSEFPFGTGPKPEFFPRRNRLIAGLCRAVVVVEAPLDSGALITARHALELGKEVLAVPGRPTDER
SLGANRLIQDGAYPVLSAEDVLSYLGMSARPKPLPGLSPEEEALYALLQEKKEALPEALAMALGIPPERVLSLLTLLELK
GLARALPGGRYGPG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=108742 ABXH20_RS09335 WP_353300258.1 1721041..1722045(+) (dprA) [Thermus thermophilus strain TF24]
GTGGACCCCTTGGCCCTCGCCCTCCTCCCGGGCATCGGCCCCAAGCGGCTTTTGGAGGCCTTGGGGTCGGGGGACCCTCT
AGGCTTCCTGCGGGAGCGCTTCCCCGAGGCCTGGCGGCACCTCGGCGAGGCCGAGGCCCGGGCGGAAAGGGAAAGGCGCC
TTGCCGAGGCCATGGGCGTGCGCCTCTTGGGCCTCTGGGAGGAGGGCTTCCCCGAGGGGCTGAAGGCGCTTCCCCAGCCG
CCCACCCACCTCTACCTGAAGGGGGAGCTTCCCCCGGAAAGGGAGGCGGTGGCCCTCGTGGGCACGCGCCGGGCCTCCCC
TTGGGCCCTGGCCTTTGCTAGGAGGCTCGCTCGGGAGCTGGCCGAGGCCGGGCTCTGGGTGGTCTCGGGCCTCGCCCGGG
GCATAGACCGGGAGGCCCACCTCGGGGCCCTCGAGGCCGGGGGGCGCACCCTGGGCGTCCTGGGAAGCGCCCTGGACCGG
GTCTACCCCCCGGAAAACCGCCCTTTGGCCCAACGGATGGACCTCCTCTCCGAGTTCCCCTTCGGCACCGGGCCCAAGCC
CGAGTTCTTTCCCCGGCGGAACCGCCTCATCGCCGGGCTTTGCCGGGCGGTGGTCGTGGTGGAGGCCCCCCTGGACTCCG
GGGCCCTCATCACCGCCCGCCACGCCCTGGAGCTCGGCAAGGAGGTGCTGGCCGTGCCCGGAAGGCCCACGGACGAGCGT
TCTCTGGGAGCCAACCGCCTCATCCAGGACGGGGCCTACCCGGTGCTCTCCGCCGAGGATGTCCTCTCCTATCTGGGAAT
GTCCGCAAGGCCCAAGCCCCTCCCGGGCCTCTCCCCGGAGGAGGAGGCCCTTTACGCCCTCCTGCAGGAAAAGAAGGAGG
CGCTCCCCGAGGCCCTGGCCATGGCCCTGGGGATCCCCCCGGAGCGGGTGCTCTCCCTTCTCACCCTTTTGGAGCTAAAG
GGCCTGGCCCGGGCCCTCCCGGGAGGGCGCTACGGGCCAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(56-255)

DprA winged helix domain (DprA_WH)

(269-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Thermus thermophilus HB27

96.707

100

0.967
  dprA Vibrio campbellii strain DS40M4

38.827

100

0.416
  dprA Vibrio cholerae strain A1552

37.535

100

0.401
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.341

85.928

0.398

Multiple sequence alignment