Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ABXH20_RS03405 | Genome accession | NZ_AP031328 |
| Coordinates | 590659..591282 (-) | Length | 207 a.a. |
| NCBI ID | WP_011173433.1 | Uniprot ID | Q72IW7 |
| Organism | Thermus thermophilus strain TF24 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 585659..596282
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXH20_RS03385 (TthTF24_06640) | aroC | 585724..586875 (-) | 1152 | WP_353300692.1 | chorismate synthase | - |
| ABXH20_RS03390 (TthTF24_06650) | pilQ | 586934..589207 (-) | 2274 | WP_353300693.1 | secretin N-terminal domain-containing protein | Machinery gene |
| ABXH20_RS03395 (TthTF24_06660) | pilW | 589204..590091 (-) | 888 | WP_353300694.1 | competence protein | Machinery gene |
| ABXH20_RS03400 (TthTF24_06670) | pilO | 590088..590669 (-) | 582 | WP_143586070.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ABXH20_RS03405 (TthTF24_06680) | pilN | 590659..591282 (-) | 624 | WP_011173433.1 | competence protein | Machinery gene |
| ABXH20_RS03410 (TthTF24_06690) | pilM | 591275..592408 (-) | 1134 | WP_353300695.1 | type IV pilus assembly protein PilM | Machinery gene |
| ABXH20_RS03415 (TthTF24_06700) | - | 592545..593549 (-) | 1005 | WP_244340638.1 | homoisocitrate dehydrogenase | - |
| ABXH20_RS03420 (TthTF24_06710) | - | 593604..594095 (-) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| ABXH20_RS03425 (TthTF24_06720) | - | 594146..595552 (-) | 1407 | WP_353300696.1 | HD-GYP domain-containing protein | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23035.51 Da Isoelectric Point: 9.7530
>NTDB_id=108728 ABXH20_RS03405 WP_011173433.1 590659..591282(-) (pilN) [Thermus thermophilus strain TF24]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGATGGESGAR
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGATGGESGAR
Nucleotide
Download Length: 624 bp
>NTDB_id=108728 ABXH20_RS03405 WP_011173433.1 590659..591282(-) (pilN) [Thermus thermophilus strain TF24]
TTGATTAGGCTGAACCTTCTCCCCAAGAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCTTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGCAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCTC
GCCTGGCCCAGGAGGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGATTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGCGACGGGGGGTGAAAGCGGTGCTCGCTAG
TTGATTAGGCTGAACCTTCTCCCCAAGAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCTTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGCAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCTC
GCCTGGCCCAGGAGGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGATTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGCGACGGGGGGTGAAAGCGGTGCTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
100 |
100 |
1 |