Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ABXH20_RS03395 Genome accession   NZ_AP031328
Coordinates   589204..590091 (-) Length   295 a.a.
NCBI ID   WP_353300694.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584204..595091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH20_RS03380 (TthTF24_06630) - 585145..585699 (-) 555 WP_353300922.1 shikimate kinase -
  ABXH20_RS03385 (TthTF24_06640) aroC 585724..586875 (-) 1152 WP_353300692.1 chorismate synthase -
  ABXH20_RS03390 (TthTF24_06650) pilQ 586934..589207 (-) 2274 WP_353300693.1 secretin N-terminal domain-containing protein Machinery gene
  ABXH20_RS03395 (TthTF24_06660) pilW 589204..590091 (-) 888 WP_353300694.1 competence protein Machinery gene
  ABXH20_RS03400 (TthTF24_06670) pilO 590088..590669 (-) 582 WP_143586070.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABXH20_RS03405 (TthTF24_06680) pilN 590659..591282 (-) 624 WP_011173433.1 competence protein Machinery gene
  ABXH20_RS03410 (TthTF24_06690) pilM 591275..592408 (-) 1134 WP_353300695.1 type IV pilus assembly protein PilM Machinery gene
  ABXH20_RS03415 (TthTF24_06700) - 592545..593549 (-) 1005 WP_244340638.1 homoisocitrate dehydrogenase -
  ABXH20_RS03420 (TthTF24_06710) - 593604..594095 (-) 492 WP_011173430.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 30202.70 Da        Isoelectric Point: 4.5062

>NTDB_id=108726 ABXH20_RS03395 WP_353300694.1 589204..590091(-) (pilW) [Thermus thermophilus strain TF24]
MKNAWQRLKEAWENLPRSTKILLAALLLVGGVALWYVGLYLPAQVAETPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEQAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPI
PGTSGALPAPKVLSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEAEAPTPASPLERLVAEKGLRLSGTLLGPV
SVAILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 888 bp        

>NTDB_id=108726 ABXH20_RS03395 WP_353300694.1 589204..590091(-) (pilW) [Thermus thermophilus strain TF24]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGAAAACCTGCCCAGGTCCACCAAGATCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAACGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCAATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAAGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGCAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCA
CGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATC
CCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAAAC
GCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAAGGGGCGGAGGCGGAGG
CCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTG
AGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGT
GCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTG
GCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

96.271

100

0.963

Multiple sequence alignment