Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   CLC19172_RS04290 Genome accession   NZ_CP177362
Coordinates   801063..801719 (+) Length   218 a.a.
NCBI ID   WP_257395777.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19172     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 787952..838143 801063..801719 within 0


Gene organization within MGE regions


Location: 787952..838143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19172_RS04205 - 787952..789406 (-) 1455 Protein_803 DNA translocase FtsK -
  CLC19172_RS04210 (CLC19172_0830) flgL 790835..793066 (-) 2232 WP_257395783.1 flagellar hook-associated protein FlgL -
  CLC19172_RS04220 (CLC19172_0832) - 793500..794678 (+) 1179 WP_257395782.1 tyrosine-type recombinase/integrase -
  CLC19172_RS04225 (CLC19172_0833) - 794671..794856 (-) 186 WP_012661534.1 helix-turn-helix transcriptional regulator -
  CLC19172_RS04230 (CLC19172_0834) - 794858..795214 (-) 357 WP_012661535.1 hypothetical protein -
  CLC19172_RS04235 (CLC19172_0835) - 795202..795930 (-) 729 WP_257395781.1 Rha family transcriptional regulator -
  CLC19172_RS04240 (CLC19172_0836) - 796057..796536 (-) 480 WP_229238789.1 helix-turn-helix domain-containing protein -
  CLC19172_RS04245 (CLC19172_0837) - 796536..797387 (-) 852 WP_139493099.1 hypothetical protein -
  CLC19172_RS04250 (CLC19172_0838) - 797541..797747 (-) 207 WP_214126389.1 hypothetical protein -
  CLC19172_RS04255 (CLC19172_0839) - 797731..798105 (-) 375 WP_047208322.1 hypothetical protein -
  CLC19172_RS04260 (CLC19172_0840) - 798102..798968 (-) 867 WP_257395780.1 hypothetical protein -
  CLC19172_RS04265 (CLC19172_0841) - 798989..799147 (-) 159 WP_012661539.1 hypothetical protein -
  CLC19172_RS04270 (CLC19172_0842) - 799150..799329 (-) 180 WP_257395779.1 hypothetical protein -
  CLC19172_RS04275 (CLC19172_0843) - 799678..799977 (-) 300 WP_214098769.1 hypothetical protein -
  CLC19172_RS04280 (CLC19172_0844) - 799978..800184 (-) 207 WP_041570280.1 hypothetical protein -
  CLC19172_RS04285 (CLC19172_0845) - 800417..801061 (+) 645 WP_257395778.1 S24 family peptidase -
  CLC19172_RS04290 (CLC19172_0846) CJE1441 801063..801719 (+) 657 WP_257395777.1 DNA/RNA non-specific endonuclease Regulator
  CLC19172_RS04295 (CLC19172_0847) - 801930..803858 (+) 1929 WP_257395776.1 KAP family NTPase -
  CLC19172_RS04300 (CLC19172_0848) - 803839..803991 (-) 153 WP_235362394.1 hypothetical protein -
  CLC19172_RS04305 (CLC19172_0849) - 803975..804367 (-) 393 WP_257395775.1 hypothetical protein -
  CLC19172_RS04310 (CLC19172_0850) - 804607..805074 (-) 468 WP_257395774.1 DUF5675 family protein -
  CLC19172_RS04315 (CLC19172_0851) - 805075..806310 (-) 1236 WP_257395773.1 hypothetical protein -
  CLC19172_RS04320 (CLC19172_0852) - 806311..806682 (-) 372 WP_214098826.1 DUF1353 domain-containing protein -
  CLC19172_RS04325 (CLC19172_0853) - 806663..807160 (-) 498 WP_214135135.1 hypothetical protein -
  CLC19172_RS04330 (CLC19172_0854) - 807162..807797 (-) 636 WP_257395772.1 DUF4376 domain-containing protein -
  CLC19172_RS04335 (CLC19172_0855) - 807807..808256 (-) 450 WP_012661555.1 hypothetical protein -
  CLC19172_RS04340 (CLC19172_0856) - 808258..809850 (-) 1593 WP_257395771.1 hypothetical protein -
  CLC19172_RS04345 (CLC19172_0857) - 809850..810461 (-) 612 WP_257395770.1 hypothetical protein -
  CLC19172_RS04350 (CLC19172_0858) - 810448..810774 (-) 327 WP_012661558.1 hypothetical protein -
  CLC19172_RS04355 (CLC19172_0859) - 810784..811221 (-) 438 WP_012661559.1 head-tail connector protein -
  CLC19172_RS04360 (CLC19172_0860) - 811218..811520 (-) 303 WP_257395769.1 hypothetical protein -
  CLC19172_RS04365 (CLC19172_0861) - 811531..812691 (-) 1161 WP_012661561.1 phage major capsid protein -
  CLC19172_RS04370 (CLC19172_0862) - 812702..813253 (-) 552 WP_066006888.1 HK97 family phage prohead protease -
  CLC19172_RS04375 (CLC19172_0863) - 813335..814204 (-) 870 WP_139493088.1 hypothetical protein -
  CLC19172_RS04380 (CLC19172_0864) - 814201..819429 (-) 5229 WP_257395768.1 hypothetical protein -
  CLC19172_RS04385 (CLC19172_0865) - 819462..819809 (+) 348 WP_257395767.1 hypothetical protein -
  CLC19172_RS04390 (CLC19172_0866) - 819801..820019 (-) 219 WP_214126405.1 hypothetical protein -
  CLC19172_RS04395 (CLC19172_0867) - 820100..820471 (-) 372 WP_214098817.1 DNA repair protein -
  CLC19172_RS04400 (CLC19172_0868) - 820468..821442 (-) 975 WP_257395766.1 hypothetical protein -
  CLC19172_RS04405 (CLC19172_0869) - 821506..821856 (-) 351 WP_257395765.1 hypothetical protein -
  CLC19172_RS04410 (CLC19172_0870) - 821857..822381 (-) 525 WP_257395764.1 HK97 gp10 family phage protein -
  CLC19172_RS04415 (CLC19172_0871) - 822369..823538 (-) 1170 WP_257395763.1 phage portal protein -
  CLC19172_RS04420 (CLC19172_0872) - 823825..824874 (+) 1050 WP_257395762.1 DNA cytosine methyltransferase -
  CLC19172_RS04425 (CLC19172_0873) - 824867..826897 (+) 2031 WP_257395761.1 ATP-binding protein -
  CLC19172_RS04430 (CLC19172_0874) - 827001..827630 (+) 630 WP_257395760.1 helix-turn-helix transcriptional regulator -
  CLC19172_RS04435 (CLC19172_0875) - 827689..828009 (+) 321 WP_257395759.1 hypothetical protein -
  CLC19172_RS04440 (CLC19172_0876) - 828023..828835 (-) 813 WP_257395758.1 DNA adenine methylase -
  CLC19172_RS04445 (CLC19172_0877) - 828940..830571 (-) 1632 WP_012661576.1 terminase large subunit -
  CLC19172_RS04450 (CLC19172_0878) - 830564..831199 (-) 636 WP_240388419.1 P27 family phage terminase small subunit -
  CLC19172_RS04455 (CLC19172_0879) - 831443..831793 (-) 351 WP_066006913.1 HNH endonuclease -
  CLC19172_RS04460 (CLC19172_0880) - 831790..832068 (-) 279 WP_012661579.1 hypothetical protein -
  CLC19172_RS04465 (CLC19172_0881) - 832565..833077 (-) 513 WP_257395757.1 hypothetical protein -
  CLC19172_RS04470 - 833153..833317 (-) 165 WP_240379283.1 hypothetical protein -
  CLC19172_RS04475 (CLC19172_0882) - 833792..834088 (-) 297 WP_257395756.1 hypothetical protein -
  CLC19172_RS04480 (CLC19172_0883) - 834152..834520 (+) 369 WP_256374648.1 HNH endonuclease family protein -
  CLC19172_RS04485 (CLC19172_0884) dnaE 834550..838143 (-) 3594 WP_257395755.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25795.60 Da        Isoelectric Point: 10.0865

>NTDB_id=1086917 CLC19172_RS04290 WP_257395777.1 801063..801719(+) (CJE1441) [Campylobacter lari subsp. concheus strain RM19172]
MLKKIFLLALFTSLSFAKYTQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRF
EDDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEV
LNLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYKVESENVKLYKIQCNFL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1086917 CLC19172_RS04290 WP_257395777.1 801063..801719(+) (CJE1441) [Campylobacter lari subsp. concheus strain RM19172]
ATGCTTAAAAAGATATTTTTATTAGCATTATTTACTTCATTATCTTTTGCAAAGTACACACAATATAAACCGAGTGAAGA
TTTTGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAATTTTATTATATTAATTGTTATGATTATAACT
ACAAAGGTACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTT
GAAGATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATAC
CCTTTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATC
CACAAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTGGCTTTAAAGCTTGGAGAAATTGAAGTT
TTAAATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTAT
AAAAGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATAAAGTGGAAAGTGAGAATGTAAAACTATATAAAATAC
AATGTAACTTTCTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(28-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

85.116

98.624

0.839
  CJE0566 Campylobacter jejuni RM1221

85.116

98.624

0.839

Multiple sequence alignment