Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC15629_RS05040 Genome accession   NZ_CP177359
Coordinates   978273..978926 (+) Length   217 a.a.
NCBI ID   WP_087685044.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15629     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 973273..983926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15629_RS05015 (UPTC15629_0991) - 973376..974896 (-) 1521 WP_257935440.1 inorganic phosphate transporter -
  UPTC15629_RS05020 (UPTC15629_0992) pdxA 974943..976043 (-) 1101 WP_257935439.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC15629_RS05025 (UPTC15629_0993) - 976040..976807 (-) 768 WP_214097556.1 pyridoxine 5'-phosphate synthase -
  UPTC15629_RS05030 (UPTC15629_0994) - 976863..977822 (+) 960 WP_257935438.1 Ppx/GppA family phosphatase -
  UPTC15629_RS05035 (UPTC15629_0995) - 977833..978276 (+) 444 WP_087685045.1 GatB/YqeY domain-containing protein -
  UPTC15629_RS05040 (UPTC15629_0996) CJE0566 978273..978926 (+) 654 WP_087685044.1 DNA/RNA non-specific endonuclease Regulator
  UPTC15629_RS05045 (UPTC15629_0997) dnaK 978958..980820 (-) 1863 WP_257935437.1 molecular chaperone DnaK -
  UPTC15629_RS05050 (UPTC15629_0998) grpE 980843..981352 (-) 510 WP_087685043.1 nucleotide exchange factor GrpE -
  UPTC15629_RS05055 (UPTC15629_0999) - 981349..982131 (-) 783 WP_257935436.1 HrcA family transcriptional regulator -
  UPTC15629_RS05060 - 982371..982502 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC15629_RS05065 (UPTC15629_1000) - 982491..983120 (-) 630 WP_214116630.1 hypothetical protein -
  UPTC15629_RS05070 (UPTC15629_1001) - 983117..983353 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25911.80 Da        Isoelectric Point: 9.6672

>NTDB_id=1086884 UPTC15629_RS05040 WP_087685044.1 978273..978926(+) (CJE0566) [Campylobacter lari strain RM15629]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1086884 UPTC15629_RS05040 WP_087685044.1 978273..978926(+) (CJE0566) [Campylobacter lari strain RM15629]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAGTTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAGGGTACCA
AGGCAATTGCTTATAAGTTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment