Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   ABWW34_RS04255 Genome accession   NZ_AP031323
Coordinates   759906..761579 (-) Length   557 a.a.
NCBI ID   WP_353300791.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754906..766579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW34_RS04215 (TthTF19_08270) trpS 755164..756177 (+) 1014 WP_018461708.1 tryptophan--tRNA ligase -
  ABWW34_RS04220 (TthTF19_08280) - 756174..756830 (+) 657 WP_353300786.1 chromosome segregation protein ScpA -
  ABWW34_RS04225 (TthTF19_08290) - 756849..757403 (+) 555 WP_353300787.1 Uma2 family endonuclease -
  ABWW34_RS04230 (TthTF19_08300) - 757437..757799 (-) 363 WP_060384345.1 HepT-like ribonuclease domain-containing protein -
  ABWW34_RS04235 (TthTF19_08310) - 757786..758085 (-) 300 WP_008631315.1 nucleotidyltransferase -
  ABWW34_RS04240 (TthTF19_08320) - 758108..758650 (-) 543 WP_353300788.1 Uma2 family endonuclease -
  ABWW34_RS04245 (TthTF19_08330) - 758771..759076 (-) 306 WP_353300789.1 DUF1640 domain-containing protein -
  ABWW34_RS04250 (TthTF19_08340) - 759325..759675 (-) 351 WP_353300790.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABWW34_RS04255 (TthTF19_08350) comZ 759906..761579 (-) 1674 WP_353300791.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  ABWW34_RS04260 (TthTF19_08360) pilA/pilA3 761590..762291 (-) 702 WP_014629427.1 PilW family protein Machinery gene
  ABWW34_RS04265 (TthTF19_08370) pilA/pilA2 762288..762869 (-) 582 WP_353300792.1 type II secretion system protein Machinery gene
  ABWW34_RS04270 (TthTF19_08380) pilA/pilA1 762904..763374 (-) 471 WP_165739610.1 GspH/FimT family protein Machinery gene
  ABWW34_RS04275 (TthTF19_08390) - 763540..764520 (+) 981 WP_353300793.1 YpdA family putative bacillithiol disulfide reductase -
  ABWW34_RS04280 (TthTF19_08400) ilvB 764676..766364 (+) 1689 WP_353300794.1 biosynthetic-type acetolactate synthase large subunit -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 59491.14 Da        Isoelectric Point: 8.4267

>NTDB_id=108676 ABWW34_RS04255 WP_353300791.1 759906..761579(-) (comZ) [Thermus thermophilus strain TF19]
MNAKGIALVATLALMVVIALLVFGTFFTTQIELWTTRNDTTSVQAFYAAEAGLQKYKAALFQQYVWREQSGTGGGSGCFT
SLVTGLDLYRNGTVMPFANNQLVLAQNEVVTDANGNPVGRYTATLYKDAQDGQLFTLVSEGTSGGAKARVQATFRISNTG
YLEQAIFAGAGQANKWLNGGATIRGGVYVVGNPNDPDQYVIEANGNFALYNWYDLNTYSGVANRVEPSYQRAQDLCASLR
VQYGKISVGGSTQIGEPNNKVKGVFVGRGAQDITGQNVGVCQNNKGVCTEAMGGFDLSDPPPFPTLDAKLDSEACKDYST
WRACLQGKAALRIQRIGNILSVASPPNATLSPSCLQAMQSGTLTLDTQGVDCTFTRLDGSQGGFRYTYTGDKKSGQGLLE
IFGDVVLEGINVVLNRPVDYRAQSGSTKSATLAVLKLNGKGGNLDINGNLLPDATFGLFPNHALGFVAEGDIYQRGQHVM
APVYAGGTFRVVKGNVLFGSVISNQFCTTSAGNQTNCNAGQKAEVVYIRIPKENRPALLPSLRGGKPVFQVLSYERR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=108676 ABWW34_RS04255 WP_353300791.1 759906..761579(-) (comZ) [Thermus thermophilus strain TF19]
GTGAACGCGAAAGGTATCGCCCTCGTAGCCACTTTGGCCCTCATGGTGGTCATCGCCCTCCTCGTCTTCGGCACCTTCTT
CACCACCCAGATAGAGCTCTGGACCACCCGCAACGACACCACCTCGGTCCAGGCCTTCTACGCCGCCGAGGCGGGGTTGC
AGAAGTACAAGGCCGCCCTCTTCCAGCAGTACGTCTGGCGGGAGCAGAGCGGGACGGGGGGAGGTAGCGGCTGCTTCACT
TCCCTGGTAACGGGGCTAGACCTGTACCGGAATGGAACCGTTATGCCTTTCGCCAACAACCAGCTGGTCCTGGCGCAAAA
CGAGGTGGTTACCGATGCCAACGGCAACCCCGTGGGGCGGTACACGGCAACCCTTTACAAGGACGCCCAAGACGGCCAGC
TCTTCACCCTGGTCTCCGAGGGCACCTCGGGCGGGGCCAAGGCCCGGGTCCAGGCCACCTTCCGCATCAGCAACACGGGC
TACCTGGAGCAGGCCATCTTCGCCGGCGCGGGCCAGGCCAACAAGTGGCTGAACGGCGGGGCCACCATCCGGGGCGGGGT
CTATGTGGTGGGAAACCCTAACGACCCGGACCAGTACGTCATAGAGGCCAACGGCAACTTCGCCCTCTACAACTGGTATG
ACCTTAACACCTACTCCGGGGTCGCCAACCGGGTGGAACCCAGCTACCAGCGGGCCCAGGACCTCTGCGCAAGCCTTAGG
GTGCAGTATGGCAAGATTTCCGTGGGAGGAAGCACCCAGATTGGCGAGCCCAACAACAAGGTGAAGGGGGTCTTCGTGGG
CCGGGGTGCCCAGGACATCACTGGGCAGAACGTGGGCGTATGCCAGAACAACAAAGGGGTCTGCACCGAGGCCATGGGGG
GCTTTGACCTCTCCGACCCGCCCCCCTTCCCCACCCTGGACGCCAAGCTGGACTCCGAGGCCTGCAAGGACTACTCCACC
TGGCGGGCCTGCCTCCAGGGCAAGGCCGCTTTAAGAATCCAGCGCATCGGGAACATCCTCTCCGTGGCCAGCCCGCCTAA
CGCTACCTTGTCCCCCTCCTGCCTCCAGGCCATGCAGTCCGGCACCCTGACCCTGGACACCCAGGGCGTGGACTGCACCT
TCACCCGTCTGGACGGAAGCCAGGGAGGGTTCAGGTACACCTACACGGGCGACAAGAAGAGCGGGCAGGGGCTTTTGGAG
ATCTTCGGCGACGTGGTACTGGAGGGTATAAACGTGGTGCTCAACCGGCCCGTGGACTATAGGGCCCAGTCGGGGAGCAC
CAAGAGCGCCACCCTTGCGGTGCTGAAGCTTAACGGCAAAGGCGGCAACCTGGACATCAACGGCAACCTCCTCCCCGACG
CCACCTTTGGCCTCTTCCCCAACCACGCCCTGGGCTTCGTGGCCGAAGGGGACATCTACCAGCGCGGCCAGCACGTGATG
GCCCCCGTGTACGCCGGGGGCACCTTCCGGGTGGTGAAGGGCAACGTCCTCTTCGGCTCCGTCATTAGCAACCAGTTCTG
CACCACAAGCGCCGGGAACCAAACGAACTGCAACGCCGGTCAGAAGGCCGAGGTGGTCTACATCCGCATCCCCAAGGAGA
ACCGCCCCGCGCTCCTGCCGAGCCTCCGCGGGGGGAAGCCCGTCTTCCAGGTACTCTCCTATGAGCGCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

92.294

100

0.925

Multiple sequence alignment