Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA3   Type   Machinery gene
Locus tag   ABWW34_RS04260 Genome accession   NZ_AP031323
Coordinates   761590..762291 (-) Length   233 a.a.
NCBI ID   WP_014629427.1    Uniprot ID   H9ZQX5
Organism   Thermus thermophilus strain TF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756590..767291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW34_RS04225 (TthTF19_08290) - 756849..757403 (+) 555 WP_353300787.1 Uma2 family endonuclease -
  ABWW34_RS04230 (TthTF19_08300) - 757437..757799 (-) 363 WP_060384345.1 HepT-like ribonuclease domain-containing protein -
  ABWW34_RS04235 (TthTF19_08310) - 757786..758085 (-) 300 WP_008631315.1 nucleotidyltransferase -
  ABWW34_RS04240 (TthTF19_08320) - 758108..758650 (-) 543 WP_353300788.1 Uma2 family endonuclease -
  ABWW34_RS04245 (TthTF19_08330) - 758771..759076 (-) 306 WP_353300789.1 DUF1640 domain-containing protein -
  ABWW34_RS04250 (TthTF19_08340) - 759325..759675 (-) 351 WP_353300790.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABWW34_RS04255 (TthTF19_08350) comZ 759906..761579 (-) 1674 WP_353300791.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  ABWW34_RS04260 (TthTF19_08360) pilA/pilA3 761590..762291 (-) 702 WP_014629427.1 PilW family protein Machinery gene
  ABWW34_RS04265 (TthTF19_08370) pilA/pilA2 762288..762869 (-) 582 WP_353300792.1 type II secretion system protein Machinery gene
  ABWW34_RS04270 (TthTF19_08380) pilA/pilA1 762904..763374 (-) 471 WP_165739610.1 GspH/FimT family protein Machinery gene
  ABWW34_RS04275 (TthTF19_08390) - 763540..764520 (+) 981 WP_353300793.1 YpdA family putative bacillithiol disulfide reductase -
  ABWW34_RS04280 (TthTF19_08400) ilvB 764676..766364 (+) 1689 WP_353300794.1 biosynthetic-type acetolactate synthase large subunit -
  ABWW34_RS04285 (TthTF19_08410) ilvN 766361..766873 (+) 513 WP_353300795.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 24920.35 Da        Isoelectric Point: 7.4626

>NTDB_id=108677 ABWW34_RS04260 WP_014629427.1 761590..762291(-) (pilA/pilA3) [Thermus thermophilus strain TF19]
MKRGFTLVEVLVAMAILVVVLAVGVRYFASTSELARNTQARSELQDRVRMVMQVVTADLQMAGARYWNSGNQNRAFSLPL
PPLSGSDGGPKDTLTLYYVTSLRDLASACRRVDYGFDGDTLRRSDLNATPSSGSDCTTPSSNLQPLAEGMLALDIQYQCS
DGSQKDTPDCGTDAYPRSAKVTVAGYSLTPVTNPGPASLTTVTGKTLACPQGRACYALTQEVLMPNLKPLPTP

Nucleotide


Download         Length: 702 bp        

>NTDB_id=108677 ABWW34_RS04260 WP_014629427.1 761590..762291(-) (pilA/pilA3) [Thermus thermophilus strain TF19]
ATGAAGCGCGGGTTCACCCTGGTGGAAGTCCTGGTGGCCATGGCCATCTTGGTGGTGGTCCTGGCCGTGGGCGTGCGCTA
CTTCGCAAGCACAAGCGAGCTCGCCCGGAACACCCAGGCAAGGAGCGAGCTCCAGGACCGGGTGCGCATGGTGATGCAGG
TGGTGACCGCCGACCTGCAGATGGCGGGGGCCCGCTACTGGAATAGCGGCAACCAAAACCGGGCCTTCAGCCTCCCCCTT
CCCCCTCTTTCGGGAAGCGACGGAGGCCCTAAGGACACCCTAACCCTCTACTACGTCACGAGCCTCCGGGACCTGGCCTC
CGCCTGCCGCCGGGTGGACTACGGGTTTGACGGAGACACCCTACGCCGGAGCGACCTGAACGCCACCCCCTCTTCGGGAA
GCGATTGCACCACCCCCTCTTCGAACTTGCAGCCCTTGGCCGAAGGGATGTTGGCCCTGGACATCCAATACCAGTGCAGC
GACGGAAGCCAGAAGGACACCCCCGACTGCGGTACAGACGCCTACCCCCGCTCGGCCAAGGTCACGGTGGCGGGCTACTC
CCTGACCCCGGTGACCAACCCGGGCCCCGCCTCCCTCACCACCGTCACCGGAAAGACCCTCGCCTGCCCCCAGGGCCGGG
CCTGCTACGCCCTCACCCAGGAGGTCCTCATGCCCAACCTCAAGCCCCTGCCCACCCCCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9ZQX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA3 Thermus thermophilus HB27

95.708

100

0.957

Multiple sequence alignment