Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABWW34_RS03405 Genome accession   NZ_AP031323
Coordinates   589284..589907 (-) Length   207 a.a.
NCBI ID   WP_011173433.1    Uniprot ID   Q72IW7
Organism   Thermus thermophilus strain TF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584284..594907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW34_RS03385 (TthTF19_06610) aroC 584350..585501 (-) 1152 WP_353300692.1 chorismate synthase -
  ABWW34_RS03390 (TthTF19_06620) pilQ 585560..587833 (-) 2274 WP_353300693.1 secretin N-terminal domain-containing protein Machinery gene
  ABWW34_RS03395 (TthTF19_06630) pilW 587830..588414 (-) 585 WP_353406126.1 hypothetical protein Machinery gene
  ABWW34_RS03400 (TthTF19_06640) pilO 588713..589294 (-) 582 WP_143586070.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABWW34_RS03405 (TthTF19_06650) pilN 589284..589907 (-) 624 WP_011173433.1 competence protein Machinery gene
  ABWW34_RS03410 (TthTF19_06660) pilM 589900..591033 (-) 1134 WP_353300695.1 type IV pilus assembly protein PilM Machinery gene
  ABWW34_RS03415 (TthTF19_06670) - 591170..592174 (-) 1005 WP_244340638.1 homoisocitrate dehydrogenase -
  ABWW34_RS03420 (TthTF19_06680) - 592229..592720 (-) 492 WP_011173430.1 DUF5317 domain-containing protein -
  ABWW34_RS03425 (TthTF19_06700) - 592771..594177 (-) 1407 WP_353300696.1 HD-GYP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23035.51 Da        Isoelectric Point: 9.7530

>NTDB_id=108674 ABWW34_RS03405 WP_011173433.1 589284..589907(-) (pilN) [Thermus thermophilus strain TF19]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGATGGESGAR

Nucleotide


Download         Length: 624 bp        

>NTDB_id=108674 ABWW34_RS03405 WP_011173433.1 589284..589907(-) (pilN) [Thermus thermophilus strain TF19]
TTGATTAGGCTGAACCTTCTCCCCAAGAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCTTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGCAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCTC
GCCTGGCCCAGGAGGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGATTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGCGACGGGGGGTGAAAGCGGTGCTCGCTAG

Domains

Predicted by InterproScan.

PilN biogenesis protein dimerization domain (PilN_bio_d)

(97-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2YCH

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Thermus thermophilus HB27

100

100

1

Multiple sequence alignment