Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTVDSCJ20_RS05470 Genome accession   NZ_CP008787
Coordinates   1052988..1053539 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1047988..1058539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCJ20_RS05435 (MTVDSCj20_1068) - 1048178..1048603 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  MTVDSCJ20_RS05440 (MTVDSCj20_1069) - 1048668..1049288 (+) 621 WP_014517039.1 NAD(P)H-dependent oxidoreductase -
  MTVDSCJ20_RS05445 (MTVDSCj20_1070) - 1049288..1049893 (+) 606 WP_014517040.1 NAD(P)H-dependent oxidoreductase -
  MTVDSCJ20_RS05450 (MTVDSCj20_1071) pgsA 1050018..1050554 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MTVDSCJ20_RS05455 (MTVDSCj20_1072) rseP 1050551..1051657 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  MTVDSCJ20_RS05460 (MTVDSCj20_1073) - 1051650..1052515 (+) 866 Protein_1050 VirK family antimicrobial peptide resistance protein -
  MTVDSCJ20_RS05465 (MTVDSCj20_1074) rpsF 1052602..1052979 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  MTVDSCJ20_RS05470 (MTVDSCj20_1075) ssb 1052988..1053539 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  MTVDSCJ20_RS05475 (MTVDSCj20_1076) rpsR 1053550..1053810 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MTVDSCJ20_RS05480 (MTVDSCj20_1077) lon 1053871..1056246 (-) 2376 WP_038402136.1 endopeptidase La -
  MTVDSCJ20_RS05485 (MTVDSCj20_1078) - 1056263..1056910 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  MTVDSCJ20_RS05490 (MTVDSCj20_1079) fliW 1057071..1057460 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MTVDSCJ20_RS05495 (MTVDSCj20_1080) proC 1057460..1058191 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  MTVDSCJ20_RS05500 (MTVDSCj20_1081) ctsT 1058188..1058490 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=108669 MTVDSCJ20_RS05470 WP_002877747.1 1052988..1053539(+) (ssb) [Campylobacter jejuni subsp. jejuni strain MTVDSCj20]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=108669 MTVDSCJ20_RS05470 WP_002877747.1 1052988..1053539(+) (ssb) [Campylobacter jejuni subsp. jejuni strain MTVDSCj20]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372

Multiple sequence alignment