Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACLF6N_RS16595 Genome accession   NZ_CP177279
Coordinates   3068230..3068874 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain KFRI-P74     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3063230..3073874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS16560 (ACLF6N_16560) mrpB 3064422..3064853 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACLF6N_RS16565 (ACLF6N_16565) mrpC 3064853..3065194 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  ACLF6N_RS16570 (ACLF6N_16570) mrpD 3065187..3066668 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  ACLF6N_RS16575 (ACLF6N_16575) mrpE 3066674..3067150 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACLF6N_RS16580 (ACLF6N_16580) mrpF 3067150..3067434 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACLF6N_RS16585 (ACLF6N_16585) mnhG 3067418..3067792 (+) 375 WP_324271460.1 monovalent cation/H(+) antiporter subunit G -
  ACLF6N_RS16590 (ACLF6N_16590) yuxO 3067831..3068211 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  ACLF6N_RS16595 (ACLF6N_16595) comA 3068230..3068874 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACLF6N_RS16600 (ACLF6N_16600) comP 3068955..3071267 (-) 2313 WP_103330147.1 sensor histidine kinase Regulator
  ACLF6N_RS16605 (ACLF6N_16605) comX 3071283..3071504 (-) 222 WP_014480704.1 competence pheromone ComX -
  ACLF6N_RS16610 (ACLF6N_16610) - 3071506..3072369 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ACLF6N_RS16615 (ACLF6N_16615) degQ 3072554..3072694 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACLF6N_RS16620 (ACLF6N_16620) - 3072916..3073041 (+) 126 WP_003228793.1 hypothetical protein -
  ACLF6N_RS16625 (ACLF6N_16625) - 3073156..3073524 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1086567 ACLF6N_RS16595 WP_003220716.1 3068230..3068874(-) (comA) [Bacillus subtilis strain KFRI-P74]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1086567 ACLF6N_RS16595 WP_003220716.1 3068230..3068874(-) (comA) [Bacillus subtilis strain KFRI-P74]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment