Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACLF6N_RS13065 Genome accession   NZ_CP177279
Coordinates   2408020..2408355 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain KFRI-P74     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2403020..2413355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS13045 (ACLF6N_13045) gcvT 2403612..2404700 (-) 1089 WP_129134000.1 glycine cleavage system aminomethyltransferase GcvT -
  ACLF6N_RS13050 (ACLF6N_13050) hepAA 2405142..2406815 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  ACLF6N_RS13055 (ACLF6N_13055) yqhG 2406836..2407630 (+) 795 WP_014480249.1 YqhG family protein -
  ACLF6N_RS13060 (ACLF6N_13060) sinI 2407813..2407986 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ACLF6N_RS13065 (ACLF6N_13065) sinR 2408020..2408355 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACLF6N_RS13070 (ACLF6N_13070) tasA 2408448..2409233 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ACLF6N_RS13075 (ACLF6N_13075) sipW 2409298..2409870 (-) 573 WP_129134142.1 signal peptidase I SipW -
  ACLF6N_RS13080 (ACLF6N_13080) tapA 2409854..2410615 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  ACLF6N_RS13085 (ACLF6N_13085) yqzG 2410887..2411213 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACLF6N_RS13090 (ACLF6N_13090) spoIITA 2411255..2411434 (-) 180 WP_029726723.1 YqzE family protein -
  ACLF6N_RS13095 (ACLF6N_13095) comGG 2411506..2411880 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ACLF6N_RS13100 (ACLF6N_13100) comGF 2411881..2412264 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  ACLF6N_RS13105 (ACLF6N_13105) comGE 2412290..2412637 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  ACLF6N_RS13110 (ACLF6N_13110) comGD 2412621..2413052 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  ACLF6N_RS13115 (ACLF6N_13115) comGC 2413042..2413338 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1086546 ACLF6N_RS13065 WP_003226345.1 2408020..2408355(+) (sinR) [Bacillus subtilis strain KFRI-P74]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1086546 ACLF6N_RS13065 WP_003226345.1 2408020..2408355(+) (sinR) [Bacillus subtilis strain KFRI-P74]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment