Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCX75_RS04815 Genome accession   NZ_CP177271
Coordinates   953894..954412 (-) Length   172 a.a.
NCBI ID   WP_003648134.1    Uniprot ID   A0A133PDF0
Organism   Lactobacillus gasseri strain LG-145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 948894..959412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX75_RS04795 (KCX75_04795) rplI 950030..950485 (-) 456 WP_003649726.1 50S ribosomal protein L9 -
  KCX75_RS04800 (KCX75_04800) - 950497..952515 (-) 2019 WP_003648132.1 DHH family phosphoesterase -
  KCX75_RS04805 (KCX75_04805) - 952621..953538 (-) 918 WP_020807249.1 magnesium transporter CorA family protein -
  KCX75_RS04810 (KCX75_04810) rpsR 953633..953869 (-) 237 WP_003649728.1 30S ribosomal protein S18 -
  KCX75_RS04815 (KCX75_04815) ssb 953894..954412 (-) 519 WP_003648134.1 single-stranded DNA-binding protein Machinery gene
  KCX75_RS04820 (KCX75_04820) rpsF 954446..954742 (-) 297 WP_003648136.1 30S ribosomal protein S6 -
  KCX75_RS04825 (KCX75_04825) gyrA 954929..957418 (-) 2490 WP_020807248.1 DNA gyrase subunit A -
  KCX75_RS04830 (KCX75_04830) gyrB 957429..959396 (-) 1968 WP_020807247.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18499.16 Da        Isoelectric Point: 4.7531

>NTDB_id=1086498 KCX75_RS04815 WP_003648134.1 953894..954412(-) (ssb) [Lactobacillus gasseri strain LG-145]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1086498 KCX75_RS04815 WP_003648134.1 953894..954412(-) (ssb) [Lactobacillus gasseri strain LG-145]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PDF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.494

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.432

100

0.506

Multiple sequence alignment