Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACLF6M_RS12035 Genome accession   NZ_CP177252
Coordinates   2509005..2511194 (+) Length   729 a.a.
NCBI ID   WP_412026848.1    Uniprot ID   -
Organism   Deinococcus yunweiensis strain KCTC 3955     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504005..2516194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6M_RS12010 (ACLF6M_12010) - 2505335..2506618 (-) 1284 WP_412026843.1 ABC transporter substrate-binding protein -
  ACLF6M_RS12015 (ACLF6M_12015) - 2506705..2507382 (-) 678 WP_412026844.1 glycerophosphodiester phosphodiesterase -
  ACLF6M_RS12020 (ACLF6M_12020) - 2507455..2508297 (+) 843 WP_412026845.1 MerR family transcriptional regulator -
  ACLF6M_RS12025 (ACLF6M_12025) - 2508328..2508489 (-) 162 WP_412026846.1 hypothetical protein -
  ACLF6M_RS12030 (ACLF6M_12030) comEA 2508610..2508999 (+) 390 WP_412026847.1 ComEA family DNA-binding protein Machinery gene
  ACLF6M_RS12035 (ACLF6M_12035) comEC 2509005..2511194 (+) 2190 WP_412026848.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLF6M_RS12040 (ACLF6M_12040) - 2511195..2511563 (-) 369 WP_412026849.1 hypothetical protein -
  ACLF6M_RS12045 (ACLF6M_12045) - 2511618..2512619 (-) 1002 WP_412026850.1 Gfo/Idh/MocA family protein -
  ACLF6M_RS12050 (ACLF6M_12050) - 2512763..2513887 (-) 1125 WP_412026851.1 methyltransferase domain-containing protein -
  ACLF6M_RS12055 (ACLF6M_12055) - 2513942..2515366 (+) 1425 WP_412026852.1 TrkH family potassium uptake protein -
  ACLF6M_RS12060 (ACLF6M_12060) - 2515413..2516072 (+) 660 WP_412026853.1 potassium channel family protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 75874.84 Da        Isoelectric Point: 11.0927

>NTDB_id=1086480 ACLF6M_RS12035 WP_412026848.1 2509005..2511194(+) (comEC) [Deinococcus yunweiensis strain KCTC 3955]
MARTTGARGRVAWPIPTVLGVIGGILLSLGVWWGSVALLGGALLALVDARPLLAVLALVGGAAGFGSARLVSVRTDALRP
WLGAQVTLEGEWDGQFLTLREPRARVVLAPKPAARPGHLRVSGRLVAPDGRRTPGGFDQAAWLRAQGGVFLPTPTAVLVA
ARVRSSEREGGARGWFRQGLTAGLPPRQAALMQAIELGDRNDIGREDFAEGYAVRDAFARAGLAHLMALSGQNVALITGV
LVWLLGFARLGPGWRYGVPAFLLIFYLLLVGLSPSITRAVIMGFVVLVALAVGRGKVDPYGLTALAALVCLLLFPLWLLD
IGFRLSFLAVLGLTLAGRAADRLPAALPYWLRLAVAATVLAELATLPVIAGTFGQLPLVGLPANLLAAPVMAVLVPTGFV
AGLLGPAAAPLNLLNRVLADALLGIAWAAGQFPVLPWGTVSPAGVIAYAVCAGAGVLWLLGRVRARAVLGTVLACTVLTT
LPGRLHPPRDLVFLDVGQGDSTLLRVPGLTMLVDAGGSVNSDYDVGGRTVVPALRALGVRKLDVVVATHADTDHIEGLTS
VLRSLPVGELWIGHRKAGDPVLDAVLAAAQARRVPVRQVTRGDRISAAGLSVTVLWPPGNVWSTADNDNSVAVKVESGAW
STALLGDLADPAESMIGVGRVNLLKAAHHGSRFSTGAALLAQATPQHAVISVGRNTYGHPNADVLGRLQAAGTKVWRTDE
VGTITWPVP

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=1086480 ACLF6M_RS12035 WP_412026848.1 2509005..2511194(+) (comEC) [Deinococcus yunweiensis strain KCTC 3955]
GTGGCACGGACGACTGGTGCGCGTGGTCGGGTGGCGTGGCCGATCCCCACCGTCCTGGGCGTGATCGGCGGCATTCTGCT
GTCGCTGGGCGTGTGGTGGGGCAGCGTGGCCCTGCTGGGCGGGGCACTGCTGGCCCTGGTCGATGCCCGGCCGCTGCTGG
CCGTGCTGGCGCTGGTGGGCGGCGCGGCCGGTTTCGGATCGGCCCGGCTGGTCAGTGTCCGCACCGACGCCCTGCGCCCG
TGGCTGGGAGCCCAGGTCACGCTGGAGGGCGAGTGGGACGGCCAGTTCCTGACGCTGCGCGAGCCGCGTGCCCGCGTGGT
GCTGGCCCCAAAACCGGCCGCGCGGCCCGGACACCTGCGCGTCAGCGGGCGGCTGGTCGCCCCGGACGGTCGGCGCACCC
CCGGCGGCTTCGACCAGGCGGCGTGGCTGCGTGCCCAGGGCGGCGTGTTCCTGCCCACCCCGACGGCCGTGCTGGTCGCG
GCCCGTGTGCGCTCCAGCGAACGCGAGGGTGGCGCACGCGGGTGGTTCCGCCAGGGCCTGACCGCCGGCCTGCCCCCACG
CCAGGCAGCCCTGATGCAGGCCATTGAACTCGGTGACCGCAACGACATCGGCCGCGAGGACTTCGCGGAAGGCTACGCCG
TGCGCGACGCCTTCGCCCGCGCTGGCCTGGCGCACCTGATGGCCCTGTCTGGTCAGAACGTCGCCCTGATCACGGGCGTG
CTGGTGTGGCTGCTGGGCTTCGCGCGTCTGGGGCCGGGGTGGCGCTACGGCGTGCCGGCATTCCTGCTGATCTTCTACCT
GCTGCTGGTGGGCCTGTCGCCCAGCATCACCCGCGCGGTGATCATGGGCTTCGTGGTGCTGGTTGCGCTGGCGGTGGGGC
GTGGCAAGGTCGATCCCTACGGCCTGACCGCACTGGCCGCCCTGGTGTGCCTGCTGCTGTTCCCGCTGTGGCTGCTGGAC
ATCGGCTTCCGGCTGTCATTCCTGGCCGTGCTGGGTCTGACCCTGGCCGGCCGCGCCGCCGACCGTCTGCCCGCCGCGCT
GCCGTACTGGCTGCGGCTGGCCGTCGCCGCGACCGTCCTGGCCGAACTCGCCACGCTGCCGGTCATCGCAGGCACCTTTG
GACAGCTGCCGCTGGTGGGCCTGCCGGCGAACCTGCTGGCCGCGCCGGTCATGGCCGTGCTGGTGCCCACGGGCTTTGTC
GCGGGACTGCTGGGGCCGGCTGCCGCGCCGCTGAACCTCCTGAACCGCGTGCTGGCCGACGCCCTGCTGGGGATCGCGTG
GGCCGCCGGGCAGTTCCCGGTGCTCCCGTGGGGCACGGTCTCCCCTGCCGGCGTGATCGCCTACGCCGTGTGCGCCGGGG
CCGGCGTGCTGTGGCTGCTGGGCCGGGTGCGGGCACGCGCCGTCCTGGGCACGGTTCTCGCGTGTACTGTCCTGACCACG
CTGCCCGGCCGCCTGCACCCTCCGCGTGATCTGGTCTTTCTGGATGTGGGCCAGGGCGACAGTACCCTGCTCCGCGTGCC
TGGCCTGACCATGCTGGTCGATGCCGGCGGCTCCGTGAACAGCGACTACGACGTCGGGGGCCGCACGGTCGTTCCGGCCC
TGCGTGCCCTGGGGGTGCGAAAGCTGGACGTTGTGGTCGCCACCCATGCCGATACCGACCACATTGAGGGGCTGACGAGC
GTCCTGCGTTCGTTGCCCGTCGGGGAGCTGTGGATCGGGCACCGCAAGGCGGGCGACCCGGTGCTGGACGCGGTTCTGGC
AGCCGCCCAGGCCCGCCGCGTTCCCGTGCGTCAGGTCACACGCGGCGACCGGATCAGCGCCGCCGGGCTCAGCGTGACCG
TCCTGTGGCCGCCGGGGAACGTGTGGTCGACCGCCGACAACGACAACTCGGTGGCCGTAAAGGTCGAGTCCGGGGCATGG
AGCACCGCCCTGCTGGGCGACCTGGCCGATCCCGCCGAGTCCATGATCGGTGTGGGCCGCGTGAATCTGCTCAAGGCCGC
CCACCACGGCAGCCGCTTCAGCACCGGGGCGGCCCTGCTGGCCCAGGCCACACCGCAGCACGCCGTCATCAGCGTGGGCC
GCAACACCTACGGCCACCCCAACGCGGACGTGCTGGGCAGGCTTCAGGCGGCAGGCACGAAGGTCTGGCGCACGGATGAG
GTGGGGACGATCACGTGGCCTGTACCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(214-460)

Beta-lactamase superfamily domain (Lactamase_B_2)

(512-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.12

100

0.686

Multiple sequence alignment