Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACLF6M_RS12030 Genome accession   NZ_CP177252
Coordinates   2508610..2508999 (+) Length   129 a.a.
NCBI ID   WP_412026847.1    Uniprot ID   -
Organism   Deinococcus yunweiensis strain KCTC 3955     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2503610..2513999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6M_RS12005 (ACLF6M_12005) - 2503925..2505220 (-) 1296 WP_412026842.1 ABC transporter substrate-binding protein -
  ACLF6M_RS12010 (ACLF6M_12010) - 2505335..2506618 (-) 1284 WP_412026843.1 ABC transporter substrate-binding protein -
  ACLF6M_RS12015 (ACLF6M_12015) - 2506705..2507382 (-) 678 WP_412026844.1 glycerophosphodiester phosphodiesterase -
  ACLF6M_RS12020 (ACLF6M_12020) - 2507455..2508297 (+) 843 WP_412026845.1 MerR family transcriptional regulator -
  ACLF6M_RS12025 (ACLF6M_12025) - 2508328..2508489 (-) 162 WP_412026846.1 hypothetical protein -
  ACLF6M_RS12030 (ACLF6M_12030) comEA 2508610..2508999 (+) 390 WP_412026847.1 ComEA family DNA-binding protein Machinery gene
  ACLF6M_RS12035 (ACLF6M_12035) comEC 2509005..2511194 (+) 2190 WP_412026848.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLF6M_RS12040 (ACLF6M_12040) - 2511195..2511563 (-) 369 WP_412026849.1 hypothetical protein -
  ACLF6M_RS12045 (ACLF6M_12045) - 2511618..2512619 (-) 1002 WP_412026850.1 Gfo/Idh/MocA family protein -
  ACLF6M_RS12050 (ACLF6M_12050) - 2512763..2513887 (-) 1125 WP_412026851.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13601.89 Da        Isoelectric Point: 11.9796

>NTDB_id=1086479 ACLF6M_RS12030 WP_412026847.1 2508610..2508999(+) (comEA) [Deinococcus yunweiensis strain KCTC 3955]
MPSWTHRTEQARTAVLGAGVLLVGTLTLGPVLVPRPHAPAVTRVALPPALPPTDEPPVYASTRSITPLISGRVNVNTATQ
EQLEALPRVGPSLARAIIAGRPLRSLADLDRIRGVGEATLRLLSPLVSF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=1086479 ACLF6M_RS12030 WP_412026847.1 2508610..2508999(+) (comEA) [Deinococcus yunweiensis strain KCTC 3955]
ATGCCCAGCTGGACACACCGAACGGAGCAGGCGCGGACAGCAGTGCTGGGTGCCGGCGTGCTGCTCGTAGGTACCCTGAC
CCTGGGGCCAGTCCTCGTGCCCCGGCCACATGCGCCGGCGGTGACCCGTGTGGCCCTGCCGCCAGCGCTCCCCCCCACCG
ACGAACCGCCAGTCTATGCCTCTACGCGCAGCATCACGCCGCTGATCTCGGGGCGGGTGAACGTGAATACCGCCACCCAG
GAACAGCTGGAGGCGCTGCCCAGGGTCGGGCCAAGCCTCGCACGGGCGATCATTGCGGGCCGACCGCTCCGCTCGCTGGC
TGACCTCGACCGCATCCGGGGCGTGGGCGAGGCGACCCTGCGACTGCTCTCGCCGCTGGTGTCGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(72-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.754

94.574

0.612

Multiple sequence alignment