Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACKXGF_RS08815 Genome accession   NZ_CP177234
Coordinates   1639452..1641173 (-) Length   573 a.a.
NCBI ID   WP_411953405.1    Uniprot ID   -
Organism   Alkalibacillus sp. S2W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1634452..1646173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKXGF_RS08795 (ACKXGF_08795) - 1635022..1635552 (+) 531 WP_411953401.1 hypothetical protein -
  ACKXGF_RS08800 (ACKXGF_08800) - 1635760..1637112 (-) 1353 WP_411953402.1 aspartate kinase -
  ACKXGF_RS08805 (ACKXGF_08805) spo0A 1637230..1638009 (-) 780 WP_411953403.1 sporulation transcription factor Spo0A -
  ACKXGF_RS08810 (ACKXGF_08810) spoIVB 1638219..1639298 (-) 1080 WP_411953404.1 SpoIVB peptidase -
  ACKXGF_RS08815 (ACKXGF_08815) recN 1639452..1641173 (-) 1722 WP_411953405.1 DNA repair protein RecN Machinery gene
  ACKXGF_RS08820 (ACKXGF_08820) ahrC 1641191..1641640 (-) 450 WP_167262497.1 transcriptional regulator AhrC/ArgR -
  ACKXGF_RS08825 (ACKXGF_08825) - 1641665..1642489 (-) 825 WP_411953406.1 TlyA family RNA methyltransferase -
  ACKXGF_RS08830 (ACKXGF_08830) dxs 1642492..1644384 (-) 1893 WP_411953407.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACKXGF_RS08835 (ACKXGF_08835) - 1644437..1645021 (-) 585 WP_411953408.1 hypothetical protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65258.43 Da        Isoelectric Point: 4.5359

>NTDB_id=1086309 ACKXGF_RS08815 WP_411953405.1 1639452..1641173(-) (recN) [Alkalibacillus sp. S2W]
MLAQITIKDFAIIDEVSLTFDDGLTVLTGETGAGKSIIIDAIQLLAGARASVEYVRHQAEQALIEGLFFIDSRSEGVQNL
LEQFDIPVDYDEGSVVVERRITAKGKSICKVNGKLITLAVLKEIGRQLIDIHSQHETQSLMNPDSHINLLDHFAPERLQQ
TKEHYKELYDELQSLRRKYDELSHNEQEVVQRIDLLTFQWQELNEANLEPKEDEQLEEERRQLMNYERIFDGLNTAYESL
AAESHTLDYLGQAMTALESLEDVNDEFKQLSQQLKTSYYSLEELSHDLRNRVDDLEFQPGRLDEIETRLFELNRLKRKYG
LELNELMTRMAEMEEELEQLHNKDTHLQSLEKEIQEVQKDALTEAEHLHKLRQEIANDLSEAIQYELKDLYLEKAQFDVS
FSTQSGPVAWRDQNIKLMKQGLDLVQFLITTNPGEPLKPLHKVASGGEISRIMLAIKSILSQHQGITSVIFDEVDTGVSG
RVAQAIAQKIHGVSSQSQVLCITHLPQVAAMADHHYLIEKDVTQKGFTNTSVQKLDQQETIDEVGRMISGGELTETTTQH
AEELIKQAASLKS

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=1086309 ACKXGF_RS08815 WP_411953405.1 1639452..1641173(-) (recN) [Alkalibacillus sp. S2W]
GTGTTAGCACAAATTACGATTAAAGATTTTGCCATTATAGATGAAGTTTCCTTGACTTTTGATGATGGTTTGACGGTTTT
AACAGGTGAAACAGGGGCAGGTAAATCAATTATTATTGATGCCATTCAATTATTAGCTGGGGCACGTGCTTCAGTTGAAT
ATGTGCGCCATCAAGCTGAACAAGCACTAATCGAAGGGTTGTTCTTTATTGATAGTCGTTCAGAAGGTGTTCAGAACTTA
TTGGAACAATTTGATATACCTGTCGATTATGATGAAGGCAGTGTTGTTGTTGAACGTCGAATAACAGCAAAAGGAAAAAG
TATATGTAAAGTTAACGGAAAACTAATTACACTTGCTGTCTTGAAGGAAATCGGACGTCAACTCATTGACATTCACAGTC
AACATGAAACGCAATCCCTTATGAATCCTGACAGTCATATTAATTTGCTTGATCATTTTGCTCCAGAACGGTTACAACAG
ACAAAAGAGCATTATAAAGAGCTGTATGATGAATTACAATCATTAAGACGTAAATACGATGAGTTATCTCATAATGAACA
AGAAGTGGTTCAACGCATTGATTTACTGACCTTTCAATGGCAAGAGTTAAATGAGGCCAATCTTGAGCCGAAAGAGGACG
AACAACTCGAAGAAGAGCGCCGCCAGTTAATGAATTATGAACGAATATTCGATGGGTTAAATACAGCTTATGAATCCCTA
GCTGCTGAAAGTCATACTTTAGATTACTTAGGTCAAGCCATGACAGCTTTAGAATCACTAGAAGATGTTAATGATGAGTT
TAAGCAGTTATCACAACAACTCAAAACGAGTTATTATTCATTAGAAGAATTGTCACATGACTTGCGTAATCGGGTGGATG
ATCTCGAATTTCAACCAGGTCGACTAGATGAAATTGAAACACGGCTTTTTGAACTTAATCGGTTAAAACGTAAGTATGGC
CTTGAACTTAATGAGCTCATGACTCGTATGGCTGAAATGGAAGAAGAATTAGAACAATTACACAACAAAGACACCCATTT
ACAATCTTTAGAAAAAGAAATACAAGAAGTTCAAAAAGATGCCCTTACAGAAGCTGAGCATTTACATAAATTACGTCAAG
AGATTGCGAATGACTTATCAGAAGCGATTCAATATGAGTTAAAAGATCTTTATCTAGAGAAGGCTCAGTTTGATGTTTCA
TTTTCGACTCAATCAGGACCAGTAGCATGGCGTGATCAAAACATTAAATTAATGAAGCAAGGTCTTGATCTTGTCCAATT
TCTAATCACCACTAATCCTGGAGAACCTTTAAAACCCTTACATAAGGTTGCTTCAGGGGGAGAGATTTCCCGTATTATGT
TAGCAATTAAAAGTATCCTTTCTCAACATCAAGGGATCACAAGTGTTATTTTTGATGAAGTTGATACAGGCGTTAGTGGT
CGAGTTGCACAGGCTATTGCTCAGAAAATACACGGCGTATCAAGTCAATCACAAGTGCTTTGTATCACCCATCTGCCGCA
AGTTGCTGCTATGGCTGATCATCACTATCTTATTGAAAAAGATGTTACGCAAAAAGGTTTTACGAATACTTCTGTACAAA
AACTGGATCAACAAGAAACAATTGATGAAGTTGGTCGAATGATTTCAGGTGGTGAATTAACTGAAACAACGACTCAACAT
GCTGAAGAATTAATTAAACAAGCTGCTTCTTTAAAAAGCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.432

100

0.51

Multiple sequence alignment