Detailed information NTG1086176

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACK56M_RS03925
• Genome accession: NZ_CP177209
• Coordinates: 835632..836498 (-)
• Length: 288 a.a.
• NCBI ID: WP_102084225.1
• Uniprot ID: -
• Organism: Pseudomonas sp. s4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 830632..841498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK56M_RS03890 (ACK56M_03890)	-	830977..832272 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
ACK56M_RS03895 (ACK56M_03895)	-	832357..832530 (-)	174	WP_013970765.1	DUF3094 family protein	-
ACK56M_RS03900 (ACK56M_03900)	-	832664..833293 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ACK56M_RS03905 (ACK56M_03905)	-	833349..833780 (-)	432	WP_015268860.1	hypothetical protein	-
ACK56M_RS03910 (ACK56M_03910)	-	833867..834574 (+)	708	WP_043935298.1	energy-coupling factor ABC transporter permease	-
ACK56M_RS03915 (ACK56M_03915)	yacG	834812..835012 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
ACK56M_RS03920 (ACK56M_03920)	coaE	835009..835632 (-)	624	WP_100413056.1	dephospho-CoA kinase	-
ACK56M_RS03925 (ACK56M_03925)	pilD	835632..836498 (-)	867	WP_102084225.1	prepilin peptidase	Machinery gene
ACK56M_RS03930 (ACK56M_03930)	-	836501..837709 (-)	1209	WP_015268864.1	type II secretion system F family protein	-
ACK56M_RS03935 (ACK56M_03935)	-	837925..838335 (+)	411	WP_023660630.1	pilin	-
ACK56M_RS03945 (ACK56M_03945)	-	839531..840355 (+)	825	WP_411959255.1	Hachiman antiphage defense system protein HamA	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32001.13 Da
• Isoelectric Point: 7.9596

>NTDB_id=1086176 ACK56M_RS03925 WP_102084225.1 835632..836498(-) (pilD) [Pseudomonas sp. s4]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPTTPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAIGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=1086176 ACK56M_RS03925 WP_102084225.1 835632..836498(-) (pilD) [Pseudomonas sp. s4]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGACCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGCGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGTTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATTGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	51.786	97.222	0.503
pilD	Acinetobacter nosocomialis M2	51.071	97.222	0.497
pilD	Vibrio campbellii strain DS40M4	50.178	97.569	0.49
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476