Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UPTC17655_RS04965 Genome accession   NZ_CP177187
Coordinates   970537..971304 (-) Length   255 a.a.
NCBI ID   WP_087685038.1    Uniprot ID   A0A698FQP5
Organism   Campylobacter lari strain RM17655     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 965537..976304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17655_RS04940 (UPTC17655_0972) flhA 966076..968235 (-) 2160 WP_087685040.1 flagellar biosynthesis protein FlhA -
  UPTC17655_RS04945 (UPTC17655_0973) - 968228..968632 (-) 405 WP_039618504.1 Rrf2 family transcriptional regulator -
  UPTC17655_RS04950 (UPTC17655_0974) rpsO 968810..969082 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  UPTC17655_RS04955 (UPTC17655_0975) - 969274..970167 (-) 894 WP_087685039.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UPTC17655_RS04960 (UPTC17655_0976) ruvX 970154..970540 (-) 387 WP_039626400.1 Holliday junction resolvase RuvX -
  UPTC17655_RS04965 (UPTC17655_0977) dprA 970537..971304 (-) 768 WP_087685038.1 DNA-processing protein DprA Machinery gene
  UPTC17655_RS04970 (UPTC17655_0978) - 971291..972358 (-) 1068 WP_250323724.1 divergent polysaccharide deacetylase family protein -
  UPTC17655_RS04975 (UPTC17655_0979) ilvC 972360..973382 (-) 1023 WP_087685037.1 ketol-acid reductoisomerase -
  UPTC17655_RS04980 (UPTC17655_0980) - 973490..975430 (+) 1941 WP_087685036.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28701.31 Da        Isoelectric Point: 6.8617

>NTDB_id=1086089 UPTC17655_RS04965 WP_087685038.1 970537..971304(-) (dprA) [Campylobacter lari strain RM17655]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAIIGSRKMSVYTKNCLVELVTLLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSIQSARLA
LSMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1086089 UPTC17655_RS04965 WP_087685038.1 970537..971304(-) (dprA) [Campylobacter lari strain RM17655]
ATGAAATTTATTGAGAATATTGAAGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTATTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TGACTTTGTTAAAAAAAGCTAAGGTTTGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCC
TATCCTCAAACCATAGCTATATTTGCTAACGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGTAATTACAAGGCAAAACCTTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGCGAGGTTGTTGTAATAGCCCAGGCTGATTTAAAAAGTGGTTCTATACAAAGTGCAAGACTTGCT
TTAAGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCCACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A698FQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

44.355

97.255

0.431

Multiple sequence alignment