Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC17655_RS04900 Genome accession   NZ_CP177187
Coordinates   959950..960603 (+) Length   217 a.a.
NCBI ID   WP_087685044.1    Uniprot ID   -
Organism   Campylobacter lari strain RM17655     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 954950..965603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17655_RS04875 (UPTC17655_0960) - 955053..956573 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC17655_RS04880 (UPTC17655_0961) pdxA 956620..957720 (-) 1101 WP_087685047.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC17655_RS04885 (UPTC17655_0962) - 957717..958484 (-) 768 WP_039628411.1 pyridoxine 5'-phosphate synthase -
  UPTC17655_RS04890 (UPTC17655_0963) - 958540..959499 (+) 960 WP_087685046.1 exopolyphosphatase -
  UPTC17655_RS04895 (UPTC17655_0964) - 959510..959953 (+) 444 WP_087685045.1 GatB/YqeY domain-containing protein -
  UPTC17655_RS04900 (UPTC17655_0965) CJE0566 959950..960603 (+) 654 WP_087685044.1 DNA/RNA non-specific endonuclease Regulator
  UPTC17655_RS04905 (UPTC17655_0966) dnaK 960635..962497 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC17655_RS04910 (UPTC17655_0967) grpE 962520..963029 (-) 510 WP_087685043.1 nucleotide exchange factor GrpE -
  UPTC17655_RS04915 (UPTC17655_0968) - 963026..963808 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC17655_RS04920 - 964048..964179 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC17655_RS04925 (UPTC17655_0969) - 964168..964797 (-) 630 WP_087685042.1 hypothetical protein -
  UPTC17655_RS04930 (UPTC17655_0970) - 964794..965030 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25911.80 Da        Isoelectric Point: 9.6672

>NTDB_id=1086088 UPTC17655_RS04900 WP_087685044.1 959950..960603(+) (CJE0566) [Campylobacter lari strain RM17655]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1086088 UPTC17655_RS04900 WP_087685044.1 959950..960603(+) (CJE0566) [Campylobacter lari strain RM17655]
ATGAAAAAAGTTTTAACGCTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATACGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGATTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAGTACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATTGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment