Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UPTC17285_RS04915 Genome accession   NZ_CP177185
Coordinates   965295..966062 (-) Length   255 a.a.
NCBI ID   WP_087685038.1    Uniprot ID   A0A698FQP5
Organism   Campylobacter lari strain RM17285     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 960295..971062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17285_RS04890 (UPTC17285_0965) flhA 960834..962993 (-) 2160 WP_087685040.1 flagellar biosynthesis protein FlhA -
  UPTC17285_RS04895 (UPTC17285_0966) - 962986..963390 (-) 405 WP_039618504.1 Rrf2 family transcriptional regulator -
  UPTC17285_RS04900 (UPTC17285_0967) rpsO 963568..963840 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  UPTC17285_RS04905 (UPTC17285_0968) - 964032..964925 (-) 894 WP_257913955.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UPTC17285_RS04910 (UPTC17285_0969) ruvX 964912..965298 (-) 387 WP_039626400.1 Holliday junction resolvase RuvX -
  UPTC17285_RS04915 (UPTC17285_0970) dprA 965295..966062 (-) 768 WP_087685038.1 DNA-processing protein DprA Machinery gene
  UPTC17285_RS04920 (UPTC17285_0971) - 966049..967116 (-) 1068 WP_250323724.1 divergent polysaccharide deacetylase family protein -
  UPTC17285_RS04925 (UPTC17285_0972) ilvC 967118..968140 (-) 1023 WP_087685037.1 ketol-acid reductoisomerase -
  UPTC17285_RS04930 (UPTC17285_0973) - 968248..970188 (+) 1941 WP_087685036.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28701.31 Da        Isoelectric Point: 6.8617

>NTDB_id=1086072 UPTC17285_RS04915 WP_087685038.1 965295..966062(-) (dprA) [Campylobacter lari strain RM17285]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAIIGSRKMSVYTKNCLVELVTLLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSIQSARLA
LSMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1086072 UPTC17285_RS04915 WP_087685038.1 965295..966062(-) (dprA) [Campylobacter lari strain RM17285]
ATGAAATTTATTGAGAATATTGAAGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTATTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TGACTTTGTTAAAAAAAGCTAAGGTTTGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCC
TATCCTCAAACCATAGCTATATTTGCTAACGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGTAATTACAAGGCAAAACCTTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGCGAGGTTGTTGTAATAGCCCAGGCTGATTTAAAAAGTGGTTCTATACAAAGTGCAAGACTTGCT
TTAAGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCCACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A698FQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

44.355

97.255

0.431

Multiple sequence alignment