Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ACJVC4_RS09610 Genome accession   NZ_CP177179
Coordinates   2052572..2053528 (-) Length   318 a.a.
NCBI ID   WP_002885753.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047572..2058528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS09580 proC 2048121..2048891 (+) 771 WP_002892025.1 pyrroline-5-carboxylate reductase -
  ACJVC4_RS09585 - 2048918..2049580 (-) 663 WP_037598525.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVC4_RS09590 - 2049693..2050136 (-) 444 WP_002892029.1 hypothetical protein -
  ACJVC4_RS09595 - 2050210..2050866 (-) 657 WP_002892031.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVC4_RS09600 - 2050878..2051075 (-) 198 WP_037598528.1 helix-turn-helix transcriptional regulator -
  ACJVC4_RS09605 - 2051322..2052515 (-) 1194 WP_002892033.1 acetate kinase -
  ACJVC4_RS09610 comYH 2052572..2053528 (-) 957 WP_002885753.1 class I SAM-dependent methyltransferase Machinery gene
  ACJVC4_RS09615 comGG 2053573..2053890 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  ACJVC4_RS09620 comYF 2053868..2054305 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACJVC4_RS09625 comGE 2054292..2054522 (-) 231 WP_014635119.1 competence type IV pilus minor pilin ComGE -
  ACJVC4_RS09630 comYD 2054554..2054982 (-) 429 WP_260312930.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACJVC4_RS09635 comYC 2054942..2055256 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  ACJVC4_RS09640 comYB 2055265..2056365 (-) 1101 WP_155115607.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACJVC4_RS09645 comYA 2056247..2057188 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  ACJVC4_RS09650 - 2057268..2057630 (-) 363 WP_002885749.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35775.66 Da        Isoelectric Point: 4.3482

>NTDB_id=1085829 ACJVC4_RS09610 WP_002885753.1 2052572..2053528(-) (comYH) [Streptococcus salivarius strain MRD-NRLLH]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1085829 ACJVC4_RS09610 WP_002885753.1 2052572..2053528(-) (comYH) [Streptococcus salivarius strain MRD-NRLLH]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATTAAACTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCGGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGCATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGATCTACCTGTTGG
TTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACCGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698

Multiple sequence alignment