Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACJVC4_RS08335 Genome accession   NZ_CP177179
Coordinates   1806116..1807150 (-) Length   344 a.a.
NCBI ID   WP_405183747.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801116..1812150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS08310 ilvD 1801349..1803067 (-) 1719 WP_002891655.1 dihydroxy-acid dehydratase -
  ACJVC4_RS08315 - 1803180..1804361 (+) 1182 WP_002891656.1 NAD(P)/FAD-dependent oxidoreductase -
  ACJVC4_RS08325 trmB 1804616..1805257 (-) 642 WP_002891657.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACJVC4_RS08330 ccrZ 1805267..1806058 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  ACJVC4_RS08335 pptB 1806116..1807150 (-) 1035 WP_405183747.1 ABC transporter permease Regulator
  ACJVC4_RS08340 pptA 1807150..1807881 (-) 732 WP_002891659.1 ABC transporter ATP-binding protein Regulator
  ACJVC4_RS08345 - 1807946..1808365 (+) 420 WP_002891660.1 HIT family protein -
  ACJVC4_RS08350 - 1808362..1808661 (+) 300 WP_002891662.1 hypothetical protein -
  ACJVC4_RS08355 - 1808842..1809009 (-) 168 WP_162837453.1 hypothetical protein -
  ACJVC4_RS08360 - 1809586..1810194 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  ACJVC4_RS08365 - 1810212..1810337 (-) 126 WP_002884447.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39967.43 Da        Isoelectric Point: 10.5986

>NTDB_id=1085819 ACJVC4_RS08335 WP_405183747.1 1806116..1807150(-) (pptB) [Streptococcus salivarius strain MRD-NRLLH]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRSYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLITQIVLVLTLVQAICLFDLKFS
LILVGIMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1085819 ACJVC4_RS08335 WP_405183747.1 1806116..1807150(-) (pptB) [Streptococcus salivarius strain MRD-NRLLH]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGCAATCATTCTTGGCTTGCTTGTGCTTTGTCTGTTATTACCATTCTGGGGGAATATTGCGACTTATCTAGAACCT
GCGGACAAACACTACCTTTTGGTGAAGGAAGAAGAAGTGCTAGACCATGTTAAGAAGGCAACGGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGC
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAGGGGATTACGTCAAGTGTAAAACGCCGTTCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CCTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCTTACGCCTTTTTGCCCTAACG
CTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTTCTTGTGGTTGTTTTTGACTACCTTTTGCTCTTCCA
GCTCACGGCGCTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTACTCAGATTGTACTTGTGCTGACTCTGGTCCAGGCTATTTGCCTCTTCGATCTTAAATTTAGC
CTGATCTTGGTTGGAATTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.965

100

0.98
  pptB Streptococcus thermophilus LMD-9

93.023

100

0.93

Multiple sequence alignment