Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLB6K_RS07605 Genome accession   NZ_CP177167
Coordinates   1619124..1620752 (+) Length   542 a.a.
NCBI ID   WP_259679082.1    Uniprot ID   -
Organism   Microcystis aeruginosa FACHB-524     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614124..1625752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLB6K_RS07600 (ACLB6K_07595) - 1616342..1618768 (-) 2427 WP_002740487.1 dynamin-like GTPase family protein -
  ACLB6K_RS07605 (ACLB6K_07600) comA 1619124..1620752 (+) 1629 WP_259679082.1 DUF655 domain-containing protein Machinery gene
  ACLB6K_RS07610 (ACLB6K_07605) - 1620976..1621287 (-) 312 WP_002734125.1 MgPME-cyclase complex family protein -
  ACLB6K_RS07615 (ACLB6K_07610) - 1621355..1622077 (-) 723 WP_221178094.1 pyridoxine 5'-phosphate synthase -
  ACLB6K_RS07620 (ACLB6K_07615) - 1622137..1622481 (-) 345 WP_002733791.1 YbaB/EbfC family nucleoid-associated protein -
  ACLB6K_RS07625 (ACLB6K_07620) - 1622645..1623937 (+) 1293 WP_123231094.1 DUF4377 domain-containing protein -
  ACLB6K_RS07630 (ACLB6K_07625) - 1624255..1625121 (-) 867 WP_420065226.1 hypothetical protein -
  ACLB6K_RS07635 (ACLB6K_07630) - 1625323..1625454 (-) 132 WP_002732870.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 61023.49 Da        Isoelectric Point: 9.3547

>NTDB_id=1085756 ACLB6K_RS07605 WP_259679082.1 1619124..1620752(+) (comA) [Microcystis aeruginosa FACHB-524]
MAIDKLRLKKIQPMRQLGFLLGTVFLLGGCHSLNAIQNRPQPLPQDQYIQVYFNYNQAQGSNYTDPYRQINRPGDNLEQI
IIDNINSAKSSIDLAVQELRLPAIAQALVARQQQGIKVRVILENIYNQPIHSLAKNQEQLSDREQERYQNLFDLVDLNRD
GKLSAEEIAQRDAITILKKAGIPLIDDSADRSKGSSLMHHKFMVIDHHTTLISSANYTLSDIHGDFSNPKTVGNANHLLV
ITNPPLARVFQKEFNLMWGREDRPRFGLDKPQRNPQTITIGNSSLTVKFSPDSTAYPWAITSNGLIGETLNKAKKSVNLA
LFVFTEQPLANILDQRHQKEIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPALAAGDKLHH
KFGLIDDKIVITGSHNWSRAANHQNDEALVIINNPTVAAHFDREFQYLYRTAKLGLPETIKNRIERDRKNCPQSVTVKSD
RLINLNTATKEELDTLPGISGKLAEKIIAARQEKPFTSLEDLDRVSGIGKGKINKLQGKVSW

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1085756 ACLB6K_RS07605 WP_259679082.1 1619124..1620752(+) (comA) [Microcystis aeruginosa FACHB-524]
ATGGCAATAGATAAATTGAGATTAAAAAAAATTCAGCCGATGAGACAGTTAGGATTTTTGTTAGGAACAGTTTTTCTTTT
GGGTGGCTGTCATTCTCTCAATGCTATCCAAAATCGTCCCCAACCCTTGCCCCAAGATCAATATATTCAAGTCTATTTTA
ATTATAATCAGGCCCAGGGTTCAAATTATACCGATCCCTATCGCCAAATTAATCGTCCAGGGGATAATTTAGAACAGATT
ATTATTGATAATATTAACTCGGCAAAAAGTTCGATCGATCTAGCGGTGCAAGAGTTACGTTTACCCGCCATCGCTCAAGC
TTTAGTTGCTCGTCAGCAGCAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATCAACCTATTCATAGTTTAG
CCAAAAACCAAGAACAATTAAGCGATCGAGAACAGGAACGTTATCAAAACCTTTTTGATTTAGTTGATCTAAATCGAGAT
GGTAAATTAAGTGCGGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCCCCTAATTGATGA
TAGTGCAGATCGCTCAAAAGGTAGCAGTTTAATGCACCATAAATTCATGGTTATTGATCATCACACTACTTTAATCAGTT
CAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATCCCAAAACTGTCGGGAATGCCAATCACTTATTAGTA
ATTACTAATCCCCCACTAGCTAGAGTTTTTCAAAAAGAATTTAACCTGATGTGGGGAAGGGAAGATCGGCCTAGATTTGG
GTTAGATAAACCCCAGAGAAACCCGCAAACAATTACTATCGGTAATAGTAGTCTGACGGTAAAATTTTCCCCCGATTCTA
CCGCTTATCCTTGGGCAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCCGTGAATTTAGCC
CTGTTTGTCTTTACAGAACAGCCTTTAGCTAATATTCTCGATCAACGACATCAAAAAGAGATAGAAATTAAAGCTTTAAT
TGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATAAATGTCGTTATG
AACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGCTCTAGCGGCGGGAGATAAGTTACACCAT
AAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCATCAAAATGATGA
AGCTTTAGTTATTATCAATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACCGTACCGCTAAAT
TAGGACTGCCGGAAACTATTAAAAATCGGATCGAACGGGATAGAAAAAACTGCCCCCAATCCGTAACAGTTAAAAGCGAT
CGCTTAATTAATTTAAACACCGCCACCAAAGAAGAATTAGATACTTTACCCGGTATCAGTGGCAAATTAGCCGAAAAAAT
TATCGCAGCCCGGCAAGAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTAAGGGAAAAATTA
ACAAGCTGCAAGGCAAAGTTAGCTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(308-448)

PLD-like domain (PLDc_2)

(81-258)

Helix-hairpin-helix motif (HHH_3)

(481-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.97

98.339

0.511

Multiple sequence alignment