Detailed information NTG1085597

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACLBNB_RS27445
• Genome accession: NZ_CP177156
• Coordinates: 6018728..6020056 (+)
• Length: 442 a.a.
• NCBI ID: WP_151264675.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain YL-21
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6013728..6025056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLBNB_RS27425 (ACLBNB_27425)	pgeF	6015227..6015952 (-)	726	WP_411835834.1	peptidoglycan editing factor PgeF	-
ACLBNB_RS27430 (ACLBNB_27430)	rluD	6015949..6016911 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACLBNB_RS27435 (ACLBNB_27435)	-	6017064..6018086 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
ACLBNB_RS27440 (ACLBNB_27440)	-	6018221..6018454 (+)	234	WP_007924721.1	PP0621 family protein	-
ACLBNB_RS27445 (ACLBNB_27445)	pilR	6018728..6020056 (+)	1329	WP_151264675.1	sigma-54-dependent transcriptional regulator	Regulator
ACLBNB_RS27450 (ACLBNB_27450)	thiO	6020053..6021153 (-)	1101	WP_124312177.1	glycine oxidase ThiO	-
ACLBNB_RS27455 (ACLBNB_27455)	-	6021208..6021609 (-)	402	WP_038575642.1	type IV pilin protein	-
ACLBNB_RS27460 (ACLBNB_27460)	-	6021623..6024691 (-)	3069	WP_411835838.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48822.23 Da
• Isoelectric Point: 8.1978

>NTDB_id=1085597 ACLBNB_RS27445 WP_151264675.1 6018728..6020056(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPYQETAVQALKAGAIDFLSKPVALARLRELLNAPLPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASIYIS
GESGSGKELVARTIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=1085597 ACLBNB_RS27445 WP_151264675.1 6018728..6020056(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
ATGGGTCCACGGCAAAAAGTTCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCTACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGCCCCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCGTACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTACGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAGTTGGCGGTGCCGCCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAATGGCCAACAATTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457