Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACKRAT_RS06730 | Genome accession | NZ_CP177130 |
| Coordinates | 1342587..1342919 (+) | Length | 110 a.a. |
| NCBI ID | WP_411844324.1 | Uniprot ID | - |
| Organism | Salinicoccus sp. HZC-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1337587..1347919
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKRAT_RS06700 (ACKRAT_06700) | argH | 1337641..1339014 (+) | 1374 | WP_411844319.1 | argininosuccinate lyase | - |
| ACKRAT_RS06705 (ACKRAT_06705) | - | 1339080..1339319 (-) | 240 | WP_411844320.1 | DUF2759 domain-containing protein | - |
| ACKRAT_RS06710 (ACKRAT_06710) | - | 1339412..1340038 (+) | 627 | WP_411844321.1 | MBL fold metallo-hydrolase | - |
| ACKRAT_RS06715 (ACKRAT_06715) | - | 1340105..1340344 (-) | 240 | WP_017548861.1 | DUF2626 family protein | - |
| ACKRAT_RS06720 (ACKRAT_06720) | comGA | 1340555..1341556 (+) | 1002 | WP_411844322.1 | competence type IV pilus ATPase ComGA | - |
| ACKRAT_RS06725 (ACKRAT_06725) | comGB | 1341522..1342574 (+) | 1053 | WP_411844323.1 | competence type IV pilus assembly protein ComGB | - |
| ACKRAT_RS06730 (ACKRAT_06730) | comGC | 1342587..1342919 (+) | 333 | WP_411844324.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACKRAT_RS06735 (ACKRAT_06735) | - | 1342894..1343328 (+) | 435 | WP_411844325.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ACKRAT_RS06740 (ACKRAT_06740) | - | 1343318..1343581 (+) | 264 | WP_411844326.1 | hypothetical protein | - |
| ACKRAT_RS06745 (ACKRAT_06745) | - | 1343541..1343984 (+) | 444 | WP_411844327.1 | competence type IV pilus minor pilin ComGF | - |
| ACKRAT_RS06750 (ACKRAT_06750) | - | 1344145..1344633 (+) | 489 | WP_411844328.1 | shikimate kinase | - |
| ACKRAT_RS06755 (ACKRAT_06755) | gcvT | 1344877..1345962 (+) | 1086 | WP_411844430.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACKRAT_RS06760 (ACKRAT_06760) | gcvPA | 1345984..1347327 (+) | 1344 | WP_411844329.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 110 a.a. Molecular weight: 11818.75 Da Isoelectric Point: 4.6286
>NTDB_id=1085534 ACKRAT_RS06730 WP_411844324.1 1342587..1342919(+) (comGC) [Salinicoccus sp. HZC-1]
MIKKLMHKKFNNKNEEGFTLIEMLLVLLVISVLIILIIPNIAAQSANVQDTGCDAQVKMVQSQIQAYTLNEGTAPASVST
LVPDYLTDDQVTCANGTGIVIVNGQAAKSE
MIKKLMHKKFNNKNEEGFTLIEMLLVLLVISVLIILIIPNIAAQSANVQDTGCDAQVKMVQSQIQAYTLNEGTAPASVST
LVPDYLTDDQVTCANGTGIVIVNGQAAKSE
Nucleotide
Download Length: 333 bp
>NTDB_id=1085534 ACKRAT_RS06730 WP_411844324.1 1342587..1342919(+) (comGC) [Salinicoccus sp. HZC-1]
ATGATAAAGAAACTTATGCATAAAAAATTCAACAACAAAAATGAAGAGGGATTTACACTGATTGAAATGCTCCTCGTGCT
GCTCGTCATCTCGGTGCTTATTATTTTAATCATTCCAAATATTGCTGCTCAGAGTGCCAATGTTCAGGATACCGGCTGTG
ATGCACAGGTGAAGATGGTGCAAAGTCAAATCCAGGCATATACACTGAACGAAGGCACTGCACCTGCATCTGTGAGTACG
TTGGTTCCTGATTATTTAACGGACGACCAGGTGACTTGTGCAAACGGTACCGGGATAGTGATTGTAAATGGCCAGGCAGC
AAAGTCGGAATAG
ATGATAAAGAAACTTATGCATAAAAAATTCAACAACAAAAATGAAGAGGGATTTACACTGATTGAAATGCTCCTCGTGCT
GCTCGTCATCTCGGTGCTTATTATTTTAATCATTCCAAATATTGCTGCTCAGAGTGCCAATGTTCAGGATACCGGCTGTG
ATGCACAGGTGAAGATGGTGCAAAGTCAAATCCAGGCATATACACTGAACGAAGGCACTGCACCTGCATCTGTGAGTACG
TTGGTTCCTGATTATTTAACGGACGACCAGGTGACTTGTGCAAACGGTACCGGGATAGTGATTGTAAATGGCCAGGCAGC
AAAGTCGGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
56.842 |
86.364 |
0.491 |
| comGC | Staphylococcus aureus N315 |
56.842 |
86.364 |
0.491 |