Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   C645_RS02085 Genome accession   NZ_CP008740
Coordinates   422845..423459 (-) Length   204 a.a.
NCBI ID   WP_005656310.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 417845..428459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS02060 (C645_02085) proC 418413..419228 (+) 816 WP_005656306.1 pyrroline-5-carboxylate reductase -
  C645_RS02065 (C645_02090) - 419228..420394 (+) 1167 WP_005656307.1 3-phenylpropionate MFS transporter -
  C645_RS02070 (C645_02095) xerD 420425..421318 (+) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  C645_RS02075 (C645_02100) - 421491..421778 (+) 288 WP_005656308.1 DUF5339 domain-containing protein -
  C645_RS02080 (C645_02105) ruvB 421830..422837 (-) 1008 WP_046067578.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  C645_RS02085 (C645_02110) ruvA 422845..423459 (-) 615 WP_005656310.1 Holliday junction branch migration protein RuvA Machinery gene
  C645_RS02090 (C645_02115) ruvC 423522..424094 (-) 573 WP_005656311.1 crossover junction endodeoxyribonuclease RuvC -
  C645_RS02095 (C645_02120) - 424141..424881 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  C645_RS02100 (C645_02125) nudB 425041..425517 (-) 477 WP_005656312.1 dihydroneopterin triphosphate diphosphatase -
  C645_RS02105 (C645_02130) aspS 425539..427305 (-) 1767 WP_005656313.1 aspartate--tRNA ligase -
  C645_RS02110 (C645_02135) - 427524..428042 (+) 519 WP_005656314.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22612.34 Da        Isoelectric Point: 6.2711

>NTDB_id=108501 C645_RS02085 WP_005656310.1 422845..423459(-) (ruvA) [Haemophilus influenzae 2019]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENS
SDEAISALIALGYKPSEAEKMVKRVAKPELTSEQVIREALKTAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=108501 C645_RS02085 WP_005656310.1 422845..423459(-) (ruvA) [Haemophilus influenzae 2019]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGTCAAGAAACGACTTTATTCACCCATTTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTAGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCGATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GTGTAAAACAAAGTGATTTCTTTGTAGAAAGTACTCATATTCCGTCAGTTCCATCTATTGAACCGAGTGTAGAAAATTCA
TCTGATGAAGCTATTTCAGCCTTGATTGCTTTAGGTTATAAACCTTCAGAAGCAGAAAAAATGGTGAAACGAGTTGCTAA
GCCAGAATTAACCAGTGAACAAGTTATCCGCGAAGCGTTAAAAACCGCACTGTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae R6

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae D39

36.634

99.02

0.363

Multiple sequence alignment