Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLINX_RS02080 Genome accession   NZ_CP176876
Coordinates   484315..486540 (-) Length   741 a.a.
NCBI ID   WP_411565364.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain MPB27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479315..491540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLINX_RS02045 (ACLINX_02045) murB 479684..480703 (-) 1020 WP_191956463.1 UDP-N-acetylmuramate dehydrogenase -
  ACLINX_RS02050 (ACLINX_02050) - 480700..481164 (-) 465 WP_191951873.1 low molecular weight protein-tyrosine-phosphatase -
  ACLINX_RS02055 (ACLINX_02055) kdsB 481164..481928 (-) 765 WP_191956462.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLINX_RS02060 (ACLINX_02060) - 481925..482110 (-) 186 WP_003174668.1 Trm112 family protein -
  ACLINX_RS02065 (ACLINX_02065) lpxK 482135..483145 (-) 1011 WP_411565363.1 tetraacyldisaccharide 4'-kinase -
  ACLINX_RS02070 (ACLINX_02070) - 483145..483573 (-) 429 WP_181283805.1 ExbD/TolR family protein -
  ACLINX_RS02075 (ACLINX_02075) exbB 483570..484205 (-) 636 WP_104505301.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLINX_RS02080 (ACLINX_02080) comA 484315..486540 (-) 2226 WP_411565364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLINX_RS02085 (ACLINX_02085) - 486676..487191 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  ACLINX_RS02090 (ACLINX_02090) - 487195..488553 (-) 1359 WP_411565365.1 histidine kinase sensor domain-containing protein -
  ACLINX_RS02095 (ACLINX_02095) - 488540..489268 (-) 729 WP_411565366.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80502.51 Da        Isoelectric Point: 10.6397

>NTDB_id=1083486 ACLINX_RS02080 WP_411565364.1 484315..486540(-) (comA) [Pseudomonas orientalis strain MPB27]
MRTGMFALALGLLILRFLPALPHAGWLLVMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWLEG
RVVGLPQQTDTGVRFELADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLRRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLVPARSALRDSLRQRLMTADAQSHEGALAALVLGDGSGLRAEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRSLPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAVLVLTFGGRLGPWGVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTVLLWVPLIGDSLLWLAGGALEGWFQVLALLAGQLPAWTPTQVPLAYWLLSLLGAVMLLLPKGVPFRLLGWPLLLLAV
FPPGESVPHGQVMVVQLDVGQGQALILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKLGIERLDMLLLSHADADHAGGA
PAIARGLPIRRVVGGETEGLPASLGAEPCSSGERWEWDGVSFALWQWSDATSGNAKSCVLQVQANGERLLLTGDIDSAAE
HALLDTPLAVPTDWLQAPHHGSRSSSSKPFVQRLAPKSVLISRGRGNAFGHPHSQVIERYKTLGSRIYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1083486 ACLINX_RS02080 WP_411565364.1 484315..486540(-) (comA) [Pseudomonas orientalis strain MPB27]
ATGAGGACAGGGATGTTCGCGCTGGCGCTGGGGTTATTGATCCTGCGGTTTCTACCGGCGTTGCCGCACGCCGGATGGCT
GCTGGTCATGTTGGTGCTGGCCTTGATGCTGCTGCCGTTTCGTACGTACCCGTTGGCGTTTTTCCTGCTCGGTTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCTGCACTGGACGGTGAGACGCGTTGGCTGGAGGGG
CGTGTGGTCGGCTTGCCGCAACAGACGGACACCGGCGTGCGCTTTGAACTGGCCGACAGCCGGTCGCGCAAAGCCCGTCT
GCCTAAGCGCATCCGTGTGTCCTGGCACGGCGGGCCGCCGGTACGCAGTGGGGAACGCTGGCGCTTGGCTGTCACGCTCA
GGCGGCCGTCCGGCCTGCTCAATTTCCATGGCTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGGGCCACGGGC
TCGGTGAAAGACGGCGAGCGCCTGGTGCCGGCCCGCAGCGCCTTGCGCGACAGCCTGCGTCAACGCCTGATGACCGCCGA
TGCGCAAAGCCACGAAGGCGCCCTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGAGCGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCCGGGCTGATCTATGCGCTG
GTGGCCGGGATGGCACGTTACGGTTGCTGGCCGCGCAGCCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTGCCGC
AGCGCTGGGTTACGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTGTTGCTCT
GGCGGCTGCGCTTTCGGCATTTGGGCGCTTGGTGGCCGTTATTGCTGGCGTTCAACGGCGTACTGCTGCTTGAGCCCCTG
GCCAGTCTGCAACCGGGCTTCTGGTTGTCATTTGCCGCAGTTGCGGTCCTGGTCCTGACCTTCGGCGGGCGGCTGGGGCC
CTGGGGTGTCTGGCAGGCATGGACGCGCCCCCAGTGGCTGATTGCTATCGGCTTGTTTCCGGTCCTGCTGGTGCTGGGGT
TACCCATCAGCCTCACCGCGCCCGTGGCCAATTTGTTCGCGGTGCCCTGGATCAGTCTGGTGGTGTTGCCTCTGGCGCTG
CTGGGCACGGTGCTGCTGTGGGTGCCATTGATCGGTGACAGTTTACTTTGGTTGGCTGGCGGGGCGTTGGAGGGGTGGTT
CCAGGTGCTGGCCCTGCTGGCCGGGCAGTTGCCCGCCTGGACGCCGACCCAGGTGCCGCTGGCGTATTGGCTGCTCAGCC
TGCTGGGCGCGGTGATGCTGCTGCTGCCCAAGGGGGTGCCGTTTCGCTTGCTGGGCTGGCCCCTGCTGTTGCTGGCAGTG
TTTCCACCCGGGGAGTCGGTACCCCACGGGCAGGTGATGGTGGTGCAATTGGATGTCGGCCAGGGCCAGGCGTTGATCCT
GCGCACCCGCAATCATGCCTTGCTTTACGATGCCGGGCCTCGTTCCGGGGCGGTCGATCTGGGCGCTCGTGTGGTGTTGC
CATCGTTGAAAAAGCTCGGCATAGAGCGGCTGGACATGCTGCTGCTGAGCCATGCAGACGCCGATCACGCCGGTGGCGCG
CCAGCCATTGCCCGTGGTTTGCCCATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGGTTGCCGGCTTCTCTTGGAGCTGA
GCCGTGCAGCAGCGGGGAGCGGTGGGAGTGGGATGGTGTGTCGTTCGCGTTATGGCAGTGGTCTGACGCCACAAGCGGCA
ATGCCAAATCCTGCGTATTGCAGGTGCAGGCCAATGGCGAACGGCTGCTGCTCACCGGCGATATTGACAGCGCGGCGGAG
CACGCCTTGCTTGACACACCCCTGGCGGTGCCAACCGACTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCGTC
CAAACCCTTTGTGCAAAGGCTTGCGCCCAAGTCGGTGCTGATTTCCCGAGGCCGGGGCAACGCCTTCGGTCATCCTCATT
CGCAAGTGATAGAGCGTTATAAAACCCTGGGCAGCCGGATATACGACAGCGCCGAGCAAGGCGCCGTGCGTCTTCAGTTG
GGTGCCTTCCAGCCAGCAGTTGTTGCGCGCAGTCAACGCCGATTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.779

97.031

0.59
  comA Ralstonia pseudosolanacearum GMI1000

34.271

100

0.362

Multiple sequence alignment