Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AACH39_RS03750 Genome accession   NZ_AP029060
Coordinates   770980..771771 (-) Length   263 a.a.
NCBI ID   WP_215782373.1    Uniprot ID   -
Organism   Paludibacterium sp. THUN1379     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765980..776771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH39_RS03740 (THUN1379_07270) purL 766425..770381 (-) 3957 WP_215782375.1 phosphoribosylformylglycinamidine synthase -
  AACH39_RS03745 (THUN1379_07280) - 770522..770860 (+) 339 WP_215782374.1 P-II family nitrogen regulator -
  AACH39_RS03750 (THUN1379_07290) comL 770980..771771 (-) 792 WP_215782373.1 outer membrane protein assembly factor BamD Machinery gene
  AACH39_RS03755 (THUN1379_07300) rluD 771770..772858 (+) 1089 WP_215782372.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AACH39_RS03760 (THUN1379_07310) pgeF 772845..773591 (+) 747 WP_338620933.1 peptidoglycan editing factor PgeF -
  AACH39_RS03765 (THUN1379_07320) - 773720..775330 (+) 1611 WP_215782370.1 peptide chain release factor 3 -
  AACH39_RS03770 (THUN1379_07330) - 775431..776075 (+) 645 WP_215782369.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30251.12 Da        Isoelectric Point: 7.8530

>NTDB_id=108343 AACH39_RS03750 WP_215782373.1 770980..771771(-) (comL) [Paludibacterium sp. THUN1379]
MKRYVAAMLVVLGLSACATPDTYDETRGWTVDKLYTEARSELDSGNYTRAEKLYETLQARYPYGRYAQQAQIDIAYTYYR
DHEAELALAACDRFIKLHPSHPNVDYVYYLKGLIYLNNDDGWFAKWGGQDMSERDPKASANAFAAFNEVVTRFPNGKYAA
DSLKKMNQLVDALGGYQMHVARYYMKRGAYVAAVNRAQSVVSEYGNTRYVEEALAIMVEGYGRLGMTTLQGDARRVLALN
YPKSQYLSQPWHEQQMAWWKFWN

Nucleotide


Download         Length: 792 bp        

>NTDB_id=108343 AACH39_RS03750 WP_215782373.1 770980..771771(-) (comL) [Paludibacterium sp. THUN1379]
ATGAAAAGATACGTTGCAGCTATGTTGGTTGTGCTGGGATTGTCCGCGTGTGCGACGCCAGATACCTATGACGAAACGCG
TGGCTGGACTGTGGACAAGCTGTATACGGAGGCCCGTTCCGAGCTGGATTCCGGTAATTATACCCGTGCAGAGAAATTAT
ACGAAACTTTGCAGGCGCGTTATCCGTATGGCCGATATGCGCAACAGGCACAAATCGACATTGCATACACTTATTACCGC
GATCATGAGGCGGAATTGGCGCTGGCCGCTTGCGATCGCTTCATCAAGCTGCATCCTTCGCACCCGAATGTCGATTACGT
TTATTACCTCAAGGGCCTGATCTACCTGAATAACGACGATGGCTGGTTCGCCAAGTGGGGCGGTCAGGACATGAGCGAGC
GTGACCCGAAAGCCTCGGCCAATGCCTTTGCTGCTTTCAATGAAGTGGTGACCCGTTTCCCGAATGGCAAATATGCCGCC
GACTCGCTGAAGAAAATGAACCAGCTGGTGGATGCGCTGGGCGGGTATCAAATGCACGTGGCGCGCTACTACATGAAGCG
CGGTGCCTATGTGGCAGCCGTCAACCGGGCTCAGAGCGTCGTCAGCGAATACGGTAATACCCGCTATGTGGAAGAGGCGC
TGGCCATTATGGTCGAGGGCTATGGCCGGCTGGGCATGACCACGCTGCAGGGTGATGCCAGGCGTGTTCTGGCGCTTAAT
TATCCCAAGAGTCAGTATTTGAGCCAGCCATGGCATGAGCAGCAAATGGCCTGGTGGAAGTTCTGGAACTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

55.056

100

0.559
  comL Neisseria gonorrhoeae MS11

53.184

100

0.54

Multiple sequence alignment