Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK8N4_RS10645 Genome accession   NZ_CP176811
Coordinates   2260605..2261240 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain DG-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2255605..2266240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8N4_RS10630 (ACK8N4_10630) - 2256312..2257556 (+) 1245 WP_410039283.1 lipoprotein-releasing ABC transporter permease subunit -
  ACK8N4_RS10635 (ACK8N4_10635) - 2257643..2258176 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ACK8N4_RS10640 (ACK8N4_10640) comA 2258307..2260532 (+) 2226 WP_411387851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACK8N4_RS10645 (ACK8N4_10645) exbB 2260605..2261240 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK8N4_RS10650 (ACK8N4_10650) - 2261237..2261677 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  ACK8N4_RS10655 (ACK8N4_10655) lpxK 2261677..2262675 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  ACK8N4_RS10660 (ACK8N4_10660) - 2262713..2262898 (+) 186 WP_003091157.1 Trm112 family protein -
  ACK8N4_RS10665 (ACK8N4_10665) kdsB 2262898..2263662 (+) 765 WP_411387852.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK8N4_RS10670 (ACK8N4_10670) - 2263662..2264126 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ACK8N4_RS10675 (ACK8N4_10675) murB 2264123..2265142 (+) 1020 WP_033968886.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1083217 ACK8N4_RS10645 WP_003091163.1 2260605..2261240(+) (exbB) [Pseudomonas aeruginosa strain DG-1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1083217 ACK8N4_RS10645 WP_003091163.1 2260605..2261240(+) (exbB) [Pseudomonas aeruginosa strain DG-1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment