Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACK3B6_RS18330 Genome accession   NZ_CP176792
Coordinates   3580486..3581175 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain BCP32     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3575486..3586175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS18295 (ACK3B6_18295) flgN 3575668..3576150 (-) 483 WP_202852882.1 flagellar protein FlgN -
  ACK3B6_RS18300 (ACK3B6_18300) flgM 3576165..3576431 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK3B6_RS18305 (ACK3B6_18305) - 3576511..3576930 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  ACK3B6_RS18310 (ACK3B6_18310) comFC 3577004..3577726 (-) 723 WP_202852881.1 double zinc ribbon domain-containing protein Machinery gene
  ACK3B6_RS18315 (ACK3B6_18315) - 3577690..3577986 (-) 297 WP_059292436.1 late competence development ComFB family protein -
  ACK3B6_RS18320 (ACK3B6_18320) comFA 3578043..3579437 (-) 1395 WP_202852880.1 ATP-dependent helicase ComFA Machinery gene
  ACK3B6_RS18325 (ACK3B6_18325) - 3579544..3580389 (-) 846 WP_202852879.1 DegV family protein -
  ACK3B6_RS18330 (ACK3B6_18330) degU 3580486..3581175 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACK3B6_RS18335 (ACK3B6_18335) degS 3581258..3582415 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  ACK3B6_RS18340 (ACK3B6_18340) - 3582632..3583285 (+) 654 WP_044159478.1 YigZ family protein -
  ACK3B6_RS18345 (ACK3B6_18345) - 3583285..3584463 (+) 1179 WP_202852878.1 LCP family protein -
  ACK3B6_RS18350 (ACK3B6_18350) - 3584539..3585615 (-) 1077 WP_010332075.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1083029 ACK3B6_RS18330 WP_003219701.1 3580486..3581175(-) (degU) [Bacillus halotolerans strain BCP32]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1083029 ACK3B6_RS18330 WP_003219701.1 3580486..3581175(-) (degU) [Bacillus halotolerans strain BCP32]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTAGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment