Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACK3B6_RS18320 Genome accession   NZ_CP176792
Coordinates   3578043..3579437 (-) Length   464 a.a.
NCBI ID   WP_202852880.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3573043..3584437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS18285 (ACK3B6_18285) flgL 3573220..3574116 (-) 897 WP_202852883.1 flagellar hook-associated protein FlgL -
  ACK3B6_RS18290 (ACK3B6_18290) flgK 3574126..3575649 (-) 1524 WP_105990890.1 flagellar hook-associated protein FlgK -
  ACK3B6_RS18295 (ACK3B6_18295) flgN 3575668..3576150 (-) 483 WP_202852882.1 flagellar protein FlgN -
  ACK3B6_RS18300 (ACK3B6_18300) flgM 3576165..3576431 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK3B6_RS18305 (ACK3B6_18305) - 3576511..3576930 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  ACK3B6_RS18310 (ACK3B6_18310) comFC 3577004..3577726 (-) 723 WP_202852881.1 double zinc ribbon domain-containing protein Machinery gene
  ACK3B6_RS18315 (ACK3B6_18315) - 3577690..3577986 (-) 297 WP_059292436.1 late competence development ComFB family protein -
  ACK3B6_RS18320 (ACK3B6_18320) comFA 3578043..3579437 (-) 1395 WP_202852880.1 ATP-dependent helicase ComFA Machinery gene
  ACK3B6_RS18325 (ACK3B6_18325) - 3579544..3580389 (-) 846 WP_202852879.1 DegV family protein -
  ACK3B6_RS18330 (ACK3B6_18330) degU 3580486..3581175 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACK3B6_RS18335 (ACK3B6_18335) degS 3581258..3582415 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  ACK3B6_RS18340 (ACK3B6_18340) - 3582632..3583285 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52839.81 Da        Isoelectric Point: 9.6545

>NTDB_id=1083028 ACK3B6_RS18320 WP_202852880.1 3578043..3579437(-) (comFA) [Bacillus halotolerans strain BCP32]
MQTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRASEDVSLYSWRKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLPVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISVLEKAASCFKDMNYRTVAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1083028 ACK3B6_RS18320 WP_202852880.1 3578043..3579437(-) (comFA) [Bacillus halotolerans strain BCP32]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAG
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGCGAGTGAGGATGTTTCTTTATATTCCTGGCGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCCTGTTTGTATTGCAACCCCCCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGCTTTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGTGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCCTGTTTTAAAGATATGAATTATCGAACAGTGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGCCAGTTTGATCTGTTAATCACAACAACAATATTAGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.498

98.707

0.834

Multiple sequence alignment