Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AACH71_RS19935 Genome accession   NZ_AP029050
Coordinates   3933431..3934177 (+) Length   248 a.a.
NCBI ID   WP_136654296.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3928431..3939177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS19920 (BSB_38250) - 3928658..3928849 (-) 192 WP_003222590.1 hypothetical protein -
  AACH71_RS19925 (BSB_38260) valS 3929297..3931939 (+) 2643 WP_136654298.1 valine--tRNA ligase -
  AACH71_RS19930 (BSB_38270) - 3931999..3933291 (+) 1293 WP_136654297.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AACH71_RS19935 (BSB_38280) comC 3933431..3934177 (+) 747 WP_136654296.1 A24 family peptidase Machinery gene
  AACH71_RS19940 (BSB_38290) - 3934311..3935309 (+) 999 WP_095432363.1 SPOR domain-containing protein -
  AACH71_RS19945 (BSB_38300) - 3935461..3936030 (+) 570 WP_040082267.1 Maf family nucleotide pyrophosphatase -
  AACH71_RS19950 (BSB_38310) radC 3936067..3936762 (+) 696 WP_014664850.1 DNA repair protein RadC -
  AACH71_RS19955 (BSB_38320) mreB 3936854..3937867 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AACH71_RS19960 (BSB_38330) mreC 3937898..3938770 (+) 873 WP_040082268.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26545.15 Da        Isoelectric Point: 10.1313

>NTDB_id=108302 AACH71_RS19935 WP_136654296.1 3933431..3934177(+) (comC) [Bacillus stercoris strain BST19]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGMSLELLTAVVFLSLLIIVAVTDLHYMLIPNRILIFFLPFLVAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGNSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=108302 AACH71_RS19935 WP_136654296.1 3933431..3934177(+) (comC) [Bacillus stercoris strain BST19]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGCGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGCTGGAATTGTTAACCGCTGTCGTGTTTCTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTTTTCCTTCCCTTTTTGGTCGCTG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
GCCGCAATCACTCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCTGCAATAGCGGCAGGGAGTATTTTAACCTATTTATATGGGAACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.145

100

0.931

Multiple sequence alignment