Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACK3B6_RS12425 Genome accession   NZ_CP176792
Coordinates   2466847..2468577 (-) Length   576 a.a.
NCBI ID   WP_202853067.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2461847..2473577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS12405 (ACK3B6_12405) - 2462411..2462545 (+) 135 WP_024122000.1 hypothetical protein -
  ACK3B6_RS12410 (ACK3B6_12410) - 2462618..2463736 (+) 1119 WP_202853069.1 NADH-dependent flavin oxidoreductase -
  ACK3B6_RS12415 (ACK3B6_12415) spo0A 2464316..2465119 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  ACK3B6_RS12420 (ACK3B6_12420) spoIVB 2465394..2466671 (-) 1278 WP_202853068.1 SpoIVB peptidase -
  ACK3B6_RS12425 (ACK3B6_12425) recN 2466847..2468577 (-) 1731 WP_202853067.1 DNA repair protein RecN Machinery gene
  ACK3B6_RS12430 (ACK3B6_12430) argR 2468613..2469062 (-) 450 WP_010334883.1 arginine repressor ArgR -
  ACK3B6_RS12435 (ACK3B6_12435) - 2469159..2470004 (-) 846 WP_202853066.1 TlyA family RNA methyltransferase -
  ACK3B6_RS12440 (ACK3B6_12440) dxs 2470001..2471902 (-) 1902 WP_024122007.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACK3B6_RS12445 (ACK3B6_12445) - 2472080..2472970 (-) 891 WP_059293622.1 polyprenyl synthetase family protein -
  ACK3B6_RS12450 (ACK3B6_12450) - 2472960..2473214 (-) 255 WP_010334887.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64746.49 Da        Isoelectric Point: 4.6556

>NTDB_id=1082999 ACK3B6_RS12425 WP_202853067.1 2466847..2468577(-) (recN) [Bacillus halotolerans strain BCP32]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSICRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RTATRDEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1082999 ACK3B6_RS12425 WP_202853067.1 2466847..2468577(-) (recN) [Bacillus halotolerans strain BCP32]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGACAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCATATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGCTATATGAAGCTGCTTAAAAAGCTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCAGCAAAGCTTGAACTGAACGAAGATGAGCAGCTGC
AAGAGGAGCGCCAGCAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCCGAGCGCTTGAATTTTATTGAGACGCGTCTTAATGAGATCAAGCAGCTAAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACCGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCTGGATTCAGTTGGTAAAGATGTTGCAGTAGAAGCGGCAAACGTTTCCCGAATCCGAAAAACGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAACGGCGACCCGCGATGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCCCAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGAGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTCGAAGTCACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCCGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.66

100

0.957

Multiple sequence alignment