Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACK3B6_RS12415 Genome accession   NZ_CP176792
Coordinates   2464316..2465119 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain BCP32     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2459316..2470119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS12390 (ACK3B6_12390) - 2460313..2461056 (-) 744 WP_322008598.1 glycerophosphodiester phosphodiesterase -
  ACK3B6_RS12395 (ACK3B6_12395) - 2461146..2461765 (-) 620 Protein_2391 N-acetylmuramoyl-L-alanine amidase family protein -
  ACK3B6_RS12400 (ACK3B6_12400) - 2461788..2462081 (-) 294 WP_105955623.1 hypothetical protein -
  ACK3B6_RS12405 (ACK3B6_12405) - 2462411..2462545 (+) 135 WP_024122000.1 hypothetical protein -
  ACK3B6_RS12410 (ACK3B6_12410) - 2462618..2463736 (+) 1119 WP_202853069.1 NADH-dependent flavin oxidoreductase -
  ACK3B6_RS12415 (ACK3B6_12415) spo0A 2464316..2465119 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  ACK3B6_RS12420 (ACK3B6_12420) spoIVB 2465394..2466671 (-) 1278 WP_202853068.1 SpoIVB peptidase -
  ACK3B6_RS12425 (ACK3B6_12425) recN 2466847..2468577 (-) 1731 WP_202853067.1 DNA repair protein RecN Machinery gene
  ACK3B6_RS12430 (ACK3B6_12430) argR 2468613..2469062 (-) 450 WP_010334883.1 arginine repressor ArgR -
  ACK3B6_RS12435 (ACK3B6_12435) - 2469159..2470004 (-) 846 WP_202853066.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=1082998 ACK3B6_RS12415 WP_010334880.1 2464316..2465119(-) (spo0A) [Bacillus halotolerans strain BCP32]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1082998 ACK3B6_RS12415 WP_010334880.1 2464316..2465119(-) (spo0A) [Bacillus halotolerans strain BCP32]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCTTATAACGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGATATTATTATGCCTCATTTGGACGGACTTGCTGTTTTAGAGCGCCTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGACAT
CGAGCTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCATTGTTCGGTTATACAGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCAGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment