Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACK3B6_RS07880 Genome accession   NZ_CP176792
Coordinates   1509995..1510570 (+) Length   191 a.a.
NCBI ID   WP_105954142.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1508109..1509461 1509995..1510570 flank 534


Gene organization within MGE regions


Location: 1508109..1510570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS07875 (ACK3B6_07875) - 1508109..1509461 (-) 1353 WP_416042739.1 IS1182 family transposase -
  ACK3B6_RS07880 (ACK3B6_07880) rok 1509995..1510570 (+) 576 WP_105954142.1 transcriptional regulator Rok Regulator

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21757.71 Da        Isoelectric Point: 9.8783

>NTDB_id=1082990 ACK3B6_RS07880 WP_105954142.1 1509995..1510570(+) (rok) [Bacillus halotolerans strain BCP32]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSETKKEFRSERKTDSLPVLAELAAQEIRSYQPPS
QQQSAQPQLQSISSLPAGIPDGATRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGDIESAESATE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1082990 ACK3B6_RS07880 WP_105954142.1 1509995..1510570(+) (rok) [Bacillus halotolerans strain BCP32]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGATTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGCGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAACGAAAAAGGAGTTCC
GTTCTGAAAGAAAAACTGACTCTCTGCCAGTTCTCGCCGAGCTTGCAGCTCAGGAAATCAGAAGCTATCAGCCGCCATCA
CAGCAGCAGTCCGCCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGATGGAGCGACTAGAAGAAG
AAGAGGAACGGCAAGACCGGGATCTAAAGCAGCTAAACTGCGTGAAGCAGCTATTAAAACATTAAAACGCCACAACGCGG
CAATTAAAAGCTCTGAACTTCAAAAAGAGATTGAAAAGGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGTTTGATTAAAATGTATCCGGAAGTGAAAAAACCGTATCGCGGCCAGTACATTTTAGAGGGTGACATCGAATCAGCTGA
ATCAGCAACAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

95.288

100

0.953

Multiple sequence alignment