Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLH0I_RS21055 Genome accession   NZ_CP176770
Coordinates   4893076..4893711 (-) Length   211 a.a.
NCBI ID   WP_024616893.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4888076..4898711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS21020 (ACLH0I_21020) - 4888454..4888924 (-) 471 WP_250962537.1 (2Fe-2S)-binding protein -
  ACLH0I_RS21025 (ACLH0I_21025) murB 4889191..4890210 (-) 1020 WP_411385292.1 UDP-N-acetylmuramate dehydrogenase -
  ACLH0I_RS21030 (ACLH0I_21030) - 4890207..4890671 (-) 465 WP_186707183.1 low molecular weight protein-tyrosine-phosphatase -
  ACLH0I_RS21035 (ACLH0I_21035) kdsB 4890671..4891435 (-) 765 WP_186707182.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLH0I_RS21040 (ACLH0I_21040) - 4891432..4891617 (-) 186 WP_003179363.1 Trm112 family protein -
  ACLH0I_RS21045 (ACLH0I_21045) lpxK 4891641..4892651 (-) 1011 WP_411385293.1 tetraacyldisaccharide 4'-kinase -
  ACLH0I_RS21050 (ACLH0I_21050) - 4892651..4893079 (-) 429 WP_250962532.1 ExbD/TolR family protein -
  ACLH0I_RS21055 (ACLH0I_21055) exbB 4893076..4893711 (-) 636 WP_024616893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLH0I_RS21060 (ACLH0I_21060) comA 4893807..4896053 (-) 2247 WP_411385294.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLH0I_RS21065 (ACLH0I_21065) - 4896199..4896714 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  ACLH0I_RS21070 (ACLH0I_21070) - 4896915..4897694 (-) 780 WP_411387542.1 ABC transporter permease -
  ACLH0I_RS21075 (ACLH0I_21075) - 4897697..4898629 (-) 933 WP_186707178.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.95 Da        Isoelectric Point: 8.0840

>NTDB_id=1082835 ACLH0I_RS21055 WP_024616893.1 4893076..4893711(-) (exbB) [Pseudomonas sp. MPB03]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1082835 ACLH0I_RS21055 WP_024616893.1 4893076..4893711(-) (exbB) [Pseudomonas sp. MPB03]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACGCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGCTGGGGGAAGTCCTCGCGGCTGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGTTGGGCATGATCGACATCTTCA
GCGCATTTACCGGTTCCGGCATGACCACCAACGCCGCAGTACTGGCGGGGGGGATTTCCAAGGCCCTGATCACCACCGCC
GCTGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCATCGATTCCTGCAACGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.526

0.848

Multiple sequence alignment