Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   ACK1LH_RS17380 Genome accession   NZ_CP176757
Coordinates   3385460..3385600 (-) Length   46 a.a.
NCBI ID   WP_029284053.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3380460..3390600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS17360 (ACK1LH_17360) comA 3381167..3381808 (-) 642 WP_029284047.1 response regulator transcription factor Regulator
  ACK1LH_RS17365 (ACK1LH_17365) - 3381889..3384201 (-) 2313 WP_411333747.1 histidine kinase -
  ACK1LH_RS17370 (ACK1LH_17370) comX 3384222..3384383 (-) 162 WP_411333749.1 competence pheromone ComX -
  ACK1LH_RS17375 (ACK1LH_17375) - 3384387..3385313 (-) 927 WP_203288682.1 polyprenyl synthetase family protein -
  ACK1LH_RS17380 (ACK1LH_17380) degQ 3385460..3385600 (-) 141 WP_029284053.1 degradation enzyme regulation protein DegQ Regulator
  ACK1LH_RS17385 (ACK1LH_17385) - 3385828..3386055 (-) 228 WP_203288683.1 hypothetical protein -
  ACK1LH_RS17390 (ACK1LH_17390) - 3386169..3386771 (-) 603 WP_203288684.1 pyroglutamyl-peptidase I -
  ACK1LH_RS17395 (ACK1LH_17395) - 3386872..3387774 (-) 903 WP_203290377.1 aldo/keto reductase family oxidoreductase -
  ACK1LH_RS17400 (ACK1LH_17400) - 3387836..3389068 (-) 1233 WP_282034697.1 EAL and HDOD domain-containing protein -
  ACK1LH_RS17405 (ACK1LH_17405) - 3389169..3390440 (-) 1272 WP_203288685.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5612.55 Da        Isoelectric Point: 10.0051

>NTDB_id=1082801 ACK1LH_RS17380 WP_029284053.1 3385460..3385600(-) (degQ) [Metabacillus indicus strain JKLC.Or24]
MKKHNIEEITQLLKRLEKEIQETKQSLRMINKSIDKYDKYSFINVS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=1082801 ACK1LH_RS17380 WP_029284053.1 3385460..3385600(-) (degQ) [Metabacillus indicus strain JKLC.Or24]
ATGAAAAAGCACAACATTGAAGAGATTACTCAATTATTGAAACGTCTTGAAAAAGAAATTCAAGAAACGAAGCAGTCGCT
GAGAATGATCAATAAAAGCATTGATAAGTATGATAAATACTCCTTTATAAACGTGTCATAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

62.162

80.435

0.5

Multiple sequence alignment