Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACK1LH_RS17360 Genome accession   NZ_CP176757
Coordinates   3381167..3381808 (-) Length   213 a.a.
NCBI ID   WP_029284047.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3376167..3386808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS17325 (ACK1LH_17325) - 3376501..3376791 (+) 291 WP_029284033.1 Na(+)/H(+) antiporter subunit F1 -
  ACK1LH_RS17330 (ACK1LH_17330) mnhG 3376769..3377134 (+) 366 WP_029284035.1 monovalent cation/H(+) antiporter subunit G -
  ACK1LH_RS17335 (ACK1LH_17335) - 3377168..3377827 (+) 660 WP_029566630.1 DNA alkylation repair protein -
  ACK1LH_RS17340 (ACK1LH_17340) - 3377876..3378445 (-) 570 WP_029566631.1 GNAT family N-acetyltransferase -
  ACK1LH_RS17345 (ACK1LH_17345) - 3378470..3378862 (-) 393 WP_029284041.1 hotdog fold thioesterase -
  ACK1LH_RS17350 (ACK1LH_17350) - 3378876..3379937 (-) 1062 WP_411333744.1 PQQ-dependent sugar dehydrogenase -
  ACK1LH_RS17355 (ACK1LH_17355) - 3380198..3380896 (-) 699 WP_029566633.1 SIMPL domain-containing protein -
  ACK1LH_RS17360 (ACK1LH_17360) comA 3381167..3381808 (-) 642 WP_029284047.1 response regulator transcription factor Regulator
  ACK1LH_RS17365 (ACK1LH_17365) - 3381889..3384201 (-) 2313 WP_411333747.1 histidine kinase -
  ACK1LH_RS17370 (ACK1LH_17370) comX 3384222..3384383 (-) 162 WP_411333749.1 competence pheromone ComX -
  ACK1LH_RS17375 (ACK1LH_17375) - 3384387..3385313 (-) 927 WP_203288682.1 polyprenyl synthetase family protein -
  ACK1LH_RS17380 (ACK1LH_17380) degQ 3385460..3385600 (-) 141 WP_029284053.1 degradation enzyme regulation protein DegQ Regulator
  ACK1LH_RS17385 (ACK1LH_17385) - 3385828..3386055 (-) 228 WP_203288683.1 hypothetical protein -
  ACK1LH_RS17390 (ACK1LH_17390) - 3386169..3386771 (-) 603 WP_203288684.1 pyroglutamyl-peptidase I -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24049.32 Da        Isoelectric Point: 5.0127

>NTDB_id=1082800 ACK1LH_RS17360 WP_029284047.1 3381167..3381808(-) (comA) [Metabacillus indicus strain JKLC.Or24]
MLHILVVDDHPAVREGTKAILETDSQVKVSYLNPPYSKDVIQHLNFQEYDVILMDMNLGDINGMELSTEIIKHSEDCKII
LYTGYDVEDYFEEAIRLGIHGAISKTETKEKILSSIRHALSGDIVVPYSYLKSLILQQKNKSSSAHSETETLNEREKAIL
QEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLNVGSRTEAVLISKSEGIID

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1082800 ACK1LH_RS17360 WP_029284047.1 3381167..3381808(-) (comA) [Metabacillus indicus strain JKLC.Or24]
ATGTTGCATATTTTAGTTGTGGACGATCATCCGGCAGTGCGTGAAGGAACAAAGGCCATTCTTGAAACCGATTCACAAGT
GAAGGTTTCGTACCTGAATCCCCCTTACTCCAAAGATGTGATTCAGCACCTGAATTTTCAGGAGTATGATGTGATTCTTA
TGGATATGAACCTGGGAGACATAAACGGCATGGAGCTTTCCACAGAGATTATTAAGCACTCAGAGGATTGCAAAATTATT
TTATATACAGGCTATGATGTAGAGGATTATTTTGAAGAAGCCATCCGGCTTGGCATTCATGGAGCAATAAGCAAAACAGA
AACGAAAGAAAAAATTCTTTCTTCCATCCGGCATGCTCTTTCAGGAGATATTGTTGTTCCCTATTCCTATTTAAAATCCC
TTATTCTTCAGCAAAAAAATAAAAGCAGTTCTGCTCATTCAGAGACTGAGACGCTGAATGAAAGAGAAAAAGCCATTCTC
CAGGAAGTTGAACGCGGTTTAACCAACCAGGAAATTGCCGATAAGCTGCACTTGAGCAAGCGCTCGATCGAATATAGCCT
TACTTCCATCTTTAATAAATTAAATGTCGGGTCAAGAACAGAAGCCGTTCTGATTTCCAAATCCGAAGGCATTATTGATT
AG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

64.486

100

0.648

Multiple sequence alignment