Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACK1LH_RS15205 Genome accession   NZ_CP176757
Coordinates   2951501..2952259 (-) Length   252 a.a.
NCBI ID   WP_411333518.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2946501..2957259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS15180 (ACK1LH_15180) - 2947212..2947781 (-) 570 WP_203288273.1 Maf family protein -
  ACK1LH_RS15185 (ACK1LH_15185) - 2947941..2948969 (-) 1029 WP_411333516.1 SPOR domain-containing protein -
  ACK1LH_RS15190 (ACK1LH_15190) - 2949087..2949914 (-) 828 WP_035319196.1 hypothetical protein -
  ACK1LH_RS15195 (ACK1LH_15195) - 2949895..2950512 (-) 618 WP_051865417.1 PilN domain-containing protein -
  ACK1LH_RS15200 (ACK1LH_15200) pilM 2950513..2951484 (-) 972 WP_411333517.1 type IV pilus biogenesis protein PilM -
  ACK1LH_RS15205 (ACK1LH_15205) comC 2951501..2952259 (-) 759 WP_411333518.1 prepilin peptidase Machinery gene
  ACK1LH_RS15210 (ACK1LH_15210) - 2952259..2952669 (-) 411 WP_203288281.1 type IV pilin protein -
  ACK1LH_RS15215 (ACK1LH_15215) - 2952776..2953981 (-) 1206 WP_203288283.1 type II secretion system F family protein -
  ACK1LH_RS15220 (ACK1LH_15220) - 2953981..2955021 (-) 1041 WP_203290361.1 type IV pilus twitching motility protein PilT -
  ACK1LH_RS15225 (ACK1LH_15225) - 2955027..2956682 (-) 1656 WP_411333520.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 27032.79 Da        Isoelectric Point: 9.6667

>NTDB_id=1082795 ACK1LH_RS15205 WP_411333518.1 2951501..2952259(-) (comC) [Metabacillus indicus strain JKLC.Or24]
MVTFLFFIVTYGLLLGSFYNVVGLRVPMKQSIVAPRSACPGCGHTLTAGELIPVVSYVLQGGKCKKCKARISPLYPFVEG
MTALLFAAAALLLGWTGELAVALTLISLFMIIFVSDVKYMVIPDKVLLFFGGLLVFERILIPLSPWWDPLAGAAAGFSLL
YAIAFVTRGKGMGGGDIKLFAVLGLALGWKLVLLAFFLSCLAGSLAGGIAMLLGKAKRKEPMPFGPSIMAGTLAAYFFGE
PLIDWYIRLIGY

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1082795 ACK1LH_RS15205 WP_411333518.1 2951501..2952259(-) (comC) [Metabacillus indicus strain JKLC.Or24]
ATGGTAACTTTTTTATTTTTCATAGTTACTTACGGCCTCCTACTAGGCTCCTTCTACAACGTAGTCGGCCTCCGTGTTCC
AATGAAACAATCCATAGTCGCACCACGTTCCGCGTGTCCGGGGTGCGGACATACATTAACAGCAGGCGAGCTTATTCCTG
TTGTTTCTTATGTTTTACAGGGCGGTAAGTGCAAAAAATGCAAAGCCCGCATCTCTCCGCTGTATCCGTTTGTGGAAGGA
ATGACGGCGCTGCTTTTTGCAGCGGCGGCTTTGCTTTTGGGGTGGACAGGGGAACTGGCTGTTGCTCTGACGCTTATTTC
GCTGTTTATGATTATCTTTGTGTCTGATGTGAAATATATGGTGATCCCAGATAAAGTGCTGCTGTTTTTCGGCGGACTAT
TGGTTTTTGAAAGAATTTTAATTCCGCTTTCGCCTTGGTGGGATCCGCTTGCAGGCGCTGCAGCCGGATTTTCGCTGCTT
TATGCGATTGCTTTCGTGACGAGGGGCAAAGGAATGGGCGGCGGGGATATCAAGCTTTTTGCCGTTCTTGGCCTTGCTCT
TGGATGGAAGCTTGTTCTGCTTGCCTTCTTTCTCTCGTGTCTCGCCGGCTCGCTTGCCGGAGGAATAGCGATGCTTCTTG
GAAAAGCAAAGCGGAAGGAGCCGATGCCGTTCGGACCTTCCATCATGGCGGGGACTCTTGCAGCCTACTTTTTCGGAGAA
CCATTAATAGACTGGTATATCCGTTTGATCGGTTACTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(104-206)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.594

98.81

0.48

Multiple sequence alignment