Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AACH71_RS04185 Genome accession   NZ_AP029050
Coordinates   839612..840505 (-) Length   297 a.a.
NCBI ID   WP_014663958.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 834612..845505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS04170 (BSB_08190) xerC 834984..835898 (-) 915 WP_069149592.1 tyrosine recombinase XerC -
  AACH71_RS04175 (BSB_08200) trmFO 835966..837273 (-) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AACH71_RS04180 (BSB_08210) topA 837349..839424 (-) 2076 WP_014663959.1 type I DNA topoisomerase -
  AACH71_RS04185 (BSB_08220) dprA 839612..840505 (-) 894 WP_014663958.1 DNA-processing protein DprA Machinery gene
  AACH71_RS04190 (BSB_08230) sucD 840565..841467 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AACH71_RS04195 (BSB_08240) sucC 841496..842653 (-) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  AACH71_RS04200 (BSB_08250) - 842828..843109 (-) 282 WP_014663956.1 FlhB-like flagellar biosynthesis protein -
  AACH71_RS04205 (BSB_08260) - 843106..844833 (-) 1728 WP_136654482.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32991.30 Da        Isoelectric Point: 9.9819

>NTDB_id=108246 AACH71_RS04185 WP_014663958.1 839612..840505(-) (dprA) [Bacillus stercoris strain BST19]
MDQAAACLTTCRINQLLSPSLLLKWWKADPSMSLTSSVLQTVTRDKMKAAALKKKIEEFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTEELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=108246 AACH71_RS04185 WP_014663958.1 839612..840505(-) (dprA) [Bacillus stercoris strain BST19]
TTGGATCAGGCCGCTGCCTGCTTAACGACTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCATCGGTGTTACAAACGGTTACTCGTGATAAAATGAAAGCAGCTGCATTAAAAA
AGAAAATAGAAGAATTTTACCCAAAGCTCCAACGCGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATTCCTATC
TCTTCAAAGCAATATCCTTTCTGGCTTAAAACCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAGGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTACGGGAAACAAGTTGTCAATCATCTTA
CAGAAGAGCTCTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGGGAAAACCTTCAATTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGACTGAGTGAAGGCGTTATTGTCGTACAGGGCAAGGAAAAAAGCGGTTCGCTGATAACTGCC
TATCAAGCATTGGAGCAAGGTAGAGAAGTGTTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCCGAGAGAAACGTTCAATATA
CGGAACCCTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

95.286

100

0.953
  dprA Lactococcus lactis subsp. cremoris KW2

39.493

92.929

0.367
  dprA Legionella pneumophila strain ERS1305867

38.214

94.276

0.36

Multiple sequence alignment