Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACK2VN_RS07030 Genome accession   NZ_CP176690
Coordinates   1319387..1321126 (+) Length   579 a.a.
NCBI ID   WP_000947749.1    Uniprot ID   A0A1J9YIX3
Organism   Bacillus paranthracis strain GTVSS-022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1314387..1326126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VN_RS07010 (ACK2VN_07010) ispA 1314600..1315490 (+) 891 WP_000150362.1 (2E,6E)-farnesyl diphosphate synthase -
  ACK2VN_RS07015 (ACK2VN_07015) dxs 1315793..1317685 (+) 1893 WP_000366459.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACK2VN_RS07020 (ACK2VN_07020) - 1317689..1318528 (+) 840 WP_001274747.1 TlyA family RNA methyltransferase -
  ACK2VN_RS07025 (ACK2VN_07025) argR 1318671..1319120 (+) 450 WP_001032581.1 arginine repressor ArgR -
  ACK2VN_RS07030 (ACK2VN_07030) recN 1319387..1321126 (+) 1740 WP_000947749.1 DNA repair protein RecN Machinery gene
  ACK2VN_RS07035 (ACK2VN_07035) spoIVB 1321245..1322543 (+) 1299 WP_002028467.1 SpoIVB peptidase -
  ACK2VN_RS07040 (ACK2VN_07040) spo0A 1322831..1323625 (+) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  ACK2VN_RS07045 (ACK2VN_07045) - 1323879..1324025 (-) 147 WP_000803575.1 YycC family protein -
  ACK2VN_RS07050 (ACK2VN_07050) - 1324076..1324804 (+) 729 WP_000172554.1 glycerophosphodiester phosphodiesterase -
  ACK2VN_RS07055 (ACK2VN_07055) - 1324854..1325087 (-) 234 WP_001190187.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65775.82 Da        Isoelectric Point: 4.8260

>NTDB_id=1082371 ACK2VN_RS07030 WP_000947749.1 1319387..1321126(+) (recN) [Bacillus paranthracis strain GTVSS-022]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKIDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1082371 ACK2VN_RS07030 WP_000947749.1 1319387..1321126(+) (recN) [Bacillus paranthracis strain GTVSS-022]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTGTTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATAGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTATAAAGCATTAGGGGATGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCCTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCCCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCACATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment