Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   ACK2V7_RS08920 Genome accession   NZ_CP176676
Coordinates   1683213..1683863 (-) Length   216 a.a.
NCBI ID   WP_052794385.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GTVSS-018     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678213..1688863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V7_RS08885 (ACK2V7_08885) - 1678591..1679595 (+) 1005 WP_079351459.1 hypothetical protein -
  ACK2V7_RS08890 (ACK2V7_08890) tlyA 1679592..1680353 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  ACK2V7_RS08895 (ACK2V7_08895) ribF 1680319..1681173 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  ACK2V7_RS08900 (ACK2V7_08900) cmoA 1681160..1681870 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  ACK2V7_RS08905 (ACK2V7_08905) - 1681860..1682081 (-) 222 WP_002859102.1 EexN family lipoprotein -
  ACK2V7_RS08910 (ACK2V7_08910) - 1682078..1682512 (-) 435 WP_052794386.1 EexN family lipoprotein -
  ACK2V7_RS08915 (ACK2V7_08915) - 1682570..1683202 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  ACK2V7_RS08920 (ACK2V7_08920) CJE0566 1683213..1683863 (-) 651 WP_052794385.1 DNA/RNA non-specific endonuclease Regulator
  ACK2V7_RS08925 (ACK2V7_08925) nth 1683860..1684486 (-) 627 WP_002852225.1 endonuclease III -
  ACK2V7_RS08930 (ACK2V7_08930) peb4 1684567..1685388 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  ACK2V7_RS08935 (ACK2V7_08935) fbaA 1685388..1686452 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  ACK2V7_RS08940 (ACK2V7_08940) - 1686547..1687989 (+) 1443 WP_002875368.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25442.08 Da        Isoelectric Point: 9.6573

>NTDB_id=1082277 ACK2V7_RS08920 WP_052794385.1 1683213..1683863(-) (CJE0566) [Campylobacter jejuni strain GTVSS-018]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKNRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1082277 ACK2V7_RS08920 WP_052794385.1 1683213..1683863(-) (CJE0566) [Campylobacter jejuni strain GTVSS-018]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTGGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAAATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment