Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACK2V4_RS09805 Genome accession   NZ_CP176646
Coordinates   2131918..2133321 (-) Length   467 a.a.
NCBI ID   WP_029822995.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GTVSS-031     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2126918..2138321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V4_RS09770 (ACK2V4_09770) moaE 2127490..2127945 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  ACK2V4_RS09775 (ACK2V4_09775) moaD 2127947..2128204 (-) 258 WP_021484877.1 molybdopterin synthase sulfur carrier subunit -
  ACK2V4_RS09780 (ACK2V4_09780) moaC 2128201..2128680 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACK2V4_RS09785 (ACK2V4_09785) moaB 2128707..2129219 (-) 513 WP_021822490.1 molybdenum cofactor biosynthesis protein B -
  ACK2V4_RS09790 (ACK2V4_09790) moaA 2129322..2130311 (-) 990 WP_021823132.1 GTP 3',8-cyclase MoaA -
  ACK2V4_RS09795 (ACK2V4_09795) - 2130607..2131500 (+) 894 WP_005494500.1 YvcK family protein -
  ACK2V4_RS09800 (ACK2V4_09800) luxU 2131577..2131915 (-) 339 WP_062854271.1 quorum-sensing phosphorelay protein LuxU -
  ACK2V4_RS09805 (ACK2V4_09805) luxO 2131918..2133321 (-) 1404 WP_029822995.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACK2V4_RS09810 (ACK2V4_09810) uvrB 2133611..2135641 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  ACK2V4_RS09815 (ACK2V4_09815) - 2136309..2136887 (-) 579 WP_409530535.1 hypothetical protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52189.77 Da        Isoelectric Point: 6.2537

>NTDB_id=1081913 ACK2V4_RS09805 WP_029822995.1 2131918..2133321(-) (luxO) [Vibrio parahaemolyticus strain GTVSS-031]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNCYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1081913 ACK2V4_RS09805 WP_029822995.1 2131918..2133321(-) (luxO) [Vibrio parahaemolyticus strain GTVSS-031]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTTGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACATTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACTGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTAAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
ACAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment