Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FE90_RS08740 Genome accession   NZ_CP008695
Coordinates   1741829..1742935 (-) Length   368 a.a.
NCBI ID   WP_038433747.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M23ND     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736829..1747935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE90_RS08725 (FE90_1764) trpS 1737896..1738918 (+) 1023 WP_021775372.1 tryptophan--tRNA ligase -
  FE90_RS08730 (FE90_1765) guaB 1739226..1740707 (+) 1482 WP_002991454.1 IMP dehydrogenase -
  FE90_RS08735 (FE90_1766) - 1740910..1741773 (+) 864 WP_002991450.1 GRP family sugar transporter -
  FE90_RS08740 (FE90_1767) recF 1741829..1742935 (-) 1107 WP_038433747.1 DNA replication/repair protein RecF Machinery gene
  FE90_RS08745 (FE90_1768) yaaA 1742937..1743350 (-) 414 WP_038433748.1 S4 domain-containing protein YaaA -
  FE90_RS08750 (FE90_1769) hasC 1743658..1744572 (-) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  FE90_RS08755 (FE90_1771) hasB 1744754..1745962 (-) 1209 WP_011018341.1 UDP-glucose 6-dehydrogenase HasB -
  FE90_RS08760 (FE90_1772) hasA 1745998..1747257 (-) 1260 WP_002982042.1 hyaluronan synthase HasA -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41837.79 Da        Isoelectric Point: 7.8294

>NTDB_id=108162 FE90_RS08740 WP_038433747.1 1741829..1742935(-) (recF) [Streptococcus pyogenes strain M23ND]
MWIKELELKHYRNYDHLLASFLSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=108162 FE90_RS08740 WP_038433747.1 1741829..1742935(-) (recF) [Streptococcus pyogenes strain M23ND]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTTGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

63.115

99.457

0.628
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465

Multiple sequence alignment