Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2JZ_RS02310 Genome accession   NZ_CP176623
Coordinates   489282..489848 (+) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain SFAD86     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 484282..494848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JZ_RS02300 gyrA 486259..488760 (+) 2502 WP_002379833.1 DNA gyrase subunit A -
  ACK2JZ_RS02305 rpsF 488935..489237 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  ACK2JZ_RS02310 ssb 489282..489848 (+) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  ACK2JZ_RS02315 rpsR 489874..490113 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  ACK2JZ_RS02320 - 490270..492294 (+) 2025 WP_002363542.1 DHH family phosphoesterase -
  ACK2JZ_RS02325 rplI 492300..492752 (+) 453 WP_002379834.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=1081560 ACK2JZ_RS02310 WP_002364599.1 489282..489848(+) (ssb) [Enterococcus faecalis strain SFAD86]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1081560 ACK2JZ_RS02310 WP_002364599.1 489282..489848(+) (ssb) [Enterococcus faecalis strain SFAD86]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543

Multiple sequence alignment