Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CLC19222_RS06020 Genome accession   NZ_CP176604
Coordinates   1170632..1171546 (-) Length   304 a.a.
NCBI ID   WP_257404333.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19222     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165632..1176546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19222_RS05995 (CLC19222_01186) mgtE 1165970..1167313 (+) 1344 WP_257404332.1 magnesium transporter -
  CLC19222_RS06000 (CLC19222_01187) tpx 1167326..1167844 (+) 519 WP_039668727.1 thiol peroxidase -
  CLC19222_RS06005 (CLC19222_01188) - 1167841..1169226 (-) 1386 WP_257396930.1 replicative DNA helicase -
  CLC19222_RS06010 (CLC19222_01189) cysK 1169239..1170141 (-) 903 WP_257397737.1 cysteine synthase A -
  CLC19222_RS06015 (CLC19222_01190) - 1170238..1170540 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  CLC19222_RS06020 (CLC19222_01191) waaF 1170632..1171546 (-) 915 WP_257404333.1 glycosyltransferase family 9 protein Regulator
  CLC19222_RS06025 (CLC19222_01192) - 1171604..1172419 (+) 816 WP_257404334.1 glycosyltransferase family 2 protein -
  CLC19222_RS06030 (CLC19222_01193) - 1172407..1173144 (+) 738 WP_257404335.1 glycosyltransferase family 25 protein -
  CLC19222_RS06035 (CLC19222_01194) - 1173709..1175544 (+) 1836 WP_257404336.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34693.87 Da        Isoelectric Point: 10.3143

>NTDB_id=1081483 CLC19222_RS06020 WP_257404333.1 1170632..1171546(-) (waaF) [Campylobacter lari subsp. concheus strain RM19222]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILAENKKQRYKQILKARKNFGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKLLGINAGAHFGSAKRW
EASYFARVAKEFSFTHKILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNAKIAHLNLACMPCMQKVCPLKHHKCMQDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081483 CLC19222_RS06020 WP_257404333.1 1170632..1171546(-) (waaF) [Campylobacter lari subsp. concheus strain RM19222]
ATGAATATTTTTATCAACCTTCCCACTTGGCTTGGCGATGCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGCAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACTTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGTTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAGGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGTTTTACGCATAAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTATCTTTTAAAAGAAGGTATAAAGGCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAATGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACTTCACCTTGGCAAAAAAATGCTAAAATAGCGCA
TTTGAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGCAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.013

100

0.661

Multiple sequence alignment