Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CLC19222_RS04570 Genome accession   NZ_CP176604
Coordinates   880419..881186 (-) Length   255 a.a.
NCBI ID   WP_257404042.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19222     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 875419..886186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19222_RS04545 (CLC19222_00898) flhA 875962..878121 (-) 2160 WP_257396657.1 flagellar biosynthesis protein FlhA -
  CLC19222_RS04550 (CLC19222_00899) - 878114..878518 (-) 405 WP_039668490.1 Rrf2 family transcriptional regulator -
  CLC19222_RS04555 (CLC19222_00900) rpsO 878695..878967 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  CLC19222_RS04560 (CLC19222_00901) - 879156..880049 (-) 894 WP_257404043.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CLC19222_RS04565 (CLC19222_00902) ruvX 880036..880422 (-) 387 WP_012661652.1 Holliday junction resolvase RuvX -
  CLC19222_RS04570 (CLC19222_00903) dprA 880419..881186 (-) 768 WP_257404042.1 DNA-protecting protein DprA Machinery gene
  CLC19222_RS04575 (CLC19222_00904) - 881173..882231 (-) 1059 WP_371820025.1 divergent polysaccharide deacetylase family protein -
  CLC19222_RS04580 (CLC19222_00905) ilvC 882242..883264 (-) 1023 WP_257396651.1 ketol-acid reductoisomerase -
  CLC19222_RS04585 (CLC19222_00906) - 883372..885312 (+) 1941 WP_257404040.1 VacB/RNase II family 3'-5' exoribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28667.27 Da        Isoelectric Point: 7.2875

>NTDB_id=1081477 CLC19222_RS04570 WP_257404042.1 880419..881186(-) (dprA) [Campylobacter lari subsp. concheus strain RM19222]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLVELVTLLKKTNVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESDGTNLLLAAKKANLIHDFDEFAKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGFVKISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1081477 CLC19222_RS04570 WP_257404042.1 880419..881186(-) (dprA) [Campylobacter lari subsp. concheus strain RM19222]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAGGGTAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACCAAAAATTGTCTTGTTGAACTGG
TGACTTTGTTAAAAAAAACTAATGTTTGTGTGGTAAGTGGCGGGGCTTTGGGGGTTGATATCCAAGCAGCTAAAATAGCT
TACCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCTTTAAGTGAAAATGAAGGAAATTACAAGGCAAAGCCCTATGATTTTTTATTAAGAAATAGGC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCCCAAGCTGATTTAAAAAGCGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGACGGGACAAATTTGCTTTTAGCTGCAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGCAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGACGATTTAGAAAAAGTTTTAAAAAAATTTGGCGATAGAGTTTATGAGTATGAACTT
GAAGGTTTTGTAAAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.914

90.98

0.545
  dprA Helicobacter pylori 26695

45.565

97.255

0.443

Multiple sequence alignment